YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49641727
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	94	0.99
Transmembrane Helix	95	115	0.96
Cytoplasmic	116	123	0.79
Transmembrane Helix	124	146	0.87
Non-Cytoplasmic	147	162	0.82
Transmembrane Helix	163	184	0.88
Cytoplasmic	185	330	0.98
Transmembrane Helix	331	352	0.84
Non-Cytoplasmic	353	369	0.82
Transmembrane Helix	370	392	0.86
Cytoplasmic	393	423	0.80
Transmembrane Helix	424	445	0.73
Non-Cytoplasmic	446	461	0.80
Transmembrane Helix	462	481	0.93
Cytoplasmic	482	501	0.80
Transmembrane Helix	502	525	0.76
Non-Cytoplasmic	526	544	0.79
Transmembrane Helix	545	564	0.93
Cytoplasmic	565	574	0.76
Transmembrane Helix	575	594	0.88
Non-Cytoplasmic	595	610	0.80
Transmembrane Helix	611	633	0.87
Cytoplasmic	634	644	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISNWLLVF FATVSSASAV DRRDMNMNMG EVESHVHPSI TTTTDLSTVT PVAHEVMHMH  60
   61 GLPILETELT PAEKLYWESY NSTTFFTTDK GNRGAFWTHV ITLTIAAVFI YPICIALNNI 120
  121 DSGWYLPLLS IYDMVLLTSL ISLSIFSSSF PETWYPKNAY RPMSYILFVM TIVHFVSAVV 180
  181 VRTSKWISGH DYSRDLRFEL DDYTAEGSLT PLQNYNDTHS DDDEEQHRQD KRMSYDPRDS 240
  241 VGSPTTTLFD PHGKHHDDLR NGKYRDDSNS FDMGEEDLSK NLDLEQRLLE SEGFQLRHQS 300
  301 KSSIKRDTYL AKLFKSSALQ SVARNFSRVF SFLFHCTNYP MLLFFFVYIP TGLAVGNLLG 360
  361 EGNRVFNLLA HWIKGGVFVS LGILSLARYC GFGVNNGWAW NKIIIFKNQI DSNSLWFKIA 420
  421 PQGGITMEFF ESFLIAFYGC TNVFLEHLSN PGGEWAAKDL QHVSIAFMFI GCGFCGLLAE 480
  481 IKLSDWRFNH VLKHTNIQPN VIHSGFPGYS PNPFPAFTIF WTGILMSQHE QASATSTNIH 540
  541 VQWGYLLSYG SFFRIFTFIL LMLVPNQNLN PSRPFTELIT SFCLICGGLV FMESTDQIVE 600
  601 AMEYRGFTPM FTFNLSVGFV TIFMAWEMAI FMWKDWLKNR MNNR