YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50306037, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.97
Transmembrane Helix	12	35	0.92
Cytoplasmic	36	54	0.93
Transmembrane Helix	55	74	0.92
Non-Cytoplasmic	75	88	0.79
Transmembrane Helix	89	108	0.93
Cytoplasmic	109	130	0.89
Transmembrane Helix	131	153	0.88
Non-Cytoplasmic	154	163	0.76
Transmembrane Helix	164	185	0.93
Cytoplasmic	186	194	0.79
Transmembrane Helix	195	214	0.95
Non-Cytoplasmic	215	253	0.94
Transmembrane Helix	254	276	0.87
Cytoplasmic	277	289	0.78
Transmembrane Helix	290	315	0.81
Non-Cytoplasmic	316	354	0.83
Transmembrane Helix	355	379	0.80
Cytoplasmic	380	397	0.87
Transmembrane Helix	398	420	0.91
Non-Cytoplasmic	421	427	0.74
Transmembrane Helix	428	450	0.89
Cytoplasmic	451	455	0.83
Transmembrane Helix	456	477	0.90
Non-Cytoplasmic	478	495	0.89
Transmembrane Helix	496	517	0.92
Cytoplasmic	518	598	0.98
Transmembrane Helix	599	619	0.91
Non-Cytoplasmic	620	629	0.85
Transmembrane Helix	630	654	0.89
Cytoplasmic	655	723	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVMEAPLPQ GAGYAVVVGL GFVFAFAMIL TTYVLRRYQK EIITAEEFAT AGRSVKTGLI  60
   61 AAAVVSSWTW AATLLQSTTM VYKVGISGGY FYAAGAGYQV ILFSALAIKC KQRAPNAHTY 120
  121 LEIIKARYGT IGHFCYMFYA LATNVLVTAM LLTGGSAVVS DLTGMHTVAA CFLLPVGVVL 180
  181 YTIFGGIKAT FLTDYVHTIV IIVIIMIFAF TVYATNSQLG SPKAVYDLVR EAAKAHPIEG 240
  241 NAGGEYLTMR SRSGGIFFVI NIVGNFGTVF LDAGYWNKAI SSSPAAALPG YVLGGLSWIA 300
  301 IPNLISLAMG LACVALESSP NFPTYPERLT AEQVSAGLVL PTAAVTLLGK GGAVASLLLV 360
  361 FMAVTSAMSA ELIAVSSIFT YDIYRSYLKP KATGKQLIFS SHISCIVFGL IMSGFATGLY 420
  421 YAGISMGYLY ELMGIIISSA VIPCALSLFW DAQNLVAVVA SPIIGTSLAI MSWLVCTKSL 480
  481 YGEITVSTTF EDDPMLTGNI VALLSPLITI PLLTYIFKPQ NFDWEILKTI TRADEEEELL 540
  541 EAEGNEVSVS DSDSVGNNQD AEKLQAVKTV ITTVDEIPRE TIERMAEEES QYLSRASKIA 600
  601 GYLAIFFAIS FMVLWPMPMY GTGYIFSEKF FTGWVCVLII WIFFTAFCVC CYPLWEGRHG 660
  661 IYTTVRGIYW DLSGQTYKLR EWQDANPREM KAVQSQIIAK IESIRSETNK SKVRQNLDDV 720
  721 IER