YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49643818, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	87	0.99
Transmembrane Helix	88	110	0.89
Non-Cytoplasmic	111	116	0.64
Transmembrane Helix	117	136	0.91
Cytoplasmic	137	153	0.76
Transmembrane Helix	154	174	0.76
Non-Cytoplasmic	175	197	0.80
Transmembrane Helix	198	219	0.92
Cytoplasmic	220	227	0.85
Transmembrane Helix	228	250	0.88
Non-Cytoplasmic	251	282	0.92
Transmembrane Helix	283	304	0.92
Cytoplasmic	305	319	0.95
Transmembrane Helix	320	342	0.86
Non-Cytoplasmic	343	368	0.82
Transmembrane Helix	369	390	0.79
Cytoplasmic	391	420	0.90
Transmembrane Helix	421	441	0.93
Non-Cytoplasmic	442	448	0.86
Transmembrane Helix	449	472	0.92
Cytoplasmic	473	492	0.94
Transmembrane Helix	493	515	0.84
Non-Cytoplasmic	516	527	0.79
Transmembrane Helix	528	548	0.89
Cytoplasmic	549	605	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKVYLDAQ LSRVDTDEDI EKQQLFGDDN IVIERSSQLF YDGQSDSKVH GITSGHGSDV  60
   61 KNVVTHTSEF DGKHDGIRLK KALEARHVSM IAIGGSLGTG LLIGTGSSLA LAGPAAILIA 120
  121 YAFVGLLVFF VMSCLGEMAA YIPLDGFTSY STRYADPALG FAVGYAYLFK YWIIVPNQLT 180
  181 AGALVIQYWV DRDKVNPGVW ITILLVAIIT INFLGVRFFG EIEYYISAVK ITVMLGLIIL 240
  241 LLVLACGGGP NHEVLGFKYW KNPGAFKEYS TAITGAKGRF VSFASVFVLA LFAYLGTELC 300
  301 GIVVSECKNP RKAVPKAIKL TMYRIIVFYL ISIFLLGMCV PFNDPLLISA KSAKTSASAS 360
  361 PFVVAIVNAG IPVLPHIMNA CILIFVFSAA NSDLYVASRS LYGLAIDNKA PRIFAKTNKQ 420
  421 GVPYWSLLVG VLFALLAYMN VSSGSSEVFT YFVNCVSIFG LLSWISILIT YIRFDKAFRV 480
  481 QGIDKSTLAY QSPLQPYGAW FSLFFCILIG LIKNFPAFLG DTFDYKSFIT GYIGIPTYII 540
  541 SYIGYKLWYK TKIIPSEEVD LVSFKEAVDL EEEEGKMLDE ERAAHLAAHG KDLKWCYEKI 600
  601 FGWVM