YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PRM10_KLULA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	562	0.70
Transmembrane Helix	563	578	0.28
Cytoplasmic	579	630	0.59
Transmembrane Helix	631	653	0.69
Non-Cytoplasmic	654	656	0.61
Transmembrane Helix	657	677	0.89
Cytoplasmic	678	684	0.69
Transmembrane Helix	685	704	0.80
Non-Cytoplasmic	705	710	0.73
Transmembrane Helix	711	735	0.82
Cytoplasmic	736	750	0.77
Transmembrane Helix	751	773	0.92
Non-Cytoplasmic	774	787	0.82
Transmembrane Helix	788	807	0.89
Cytoplasmic	808	813	0.69
Transmembrane Helix	814	832	0.82
Non-Cytoplasmic	833	840	0.64
Transmembrane Helix	841	858	0.91
Cytoplasmic	859	867	0.62
Transmembrane Helix	868	888	0.78
Non-Cytoplasmic	889	917	0.87
Transmembrane Helix	918	941	0.89
Cytoplasmic	942	951	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSYGNNGD KNNHEKFGFN LLRKKPQQPS NRSERRADDS SSSEDEAGPS SNYVSSSQLN  60
   61 LPSFRPSGGS TDELNRANRT NVGSSDARYS PRTASNTESG NRRQQMIEDD AIATIRDNSG 120
  121 AARCFDDDDE EEEEHQEQKD SGENPADISP RTSGVTKKLQ FKSHPSIIPE DTATQDGGEY 180
  181 YEEKDAEKED QDDSVSTQSS ESKMDHFRHL FRRRSTARPH QETNDGRNSA ESHSKGGMRN 240
  241 LNGADDEVED GGFLSKFLSL TGGGLTPAVN NTDPSGENDH ERNAGQNNLE DPIPMSDIAA 300
  301 TAQQIVQAHS MMAGKSAPGT QHGASGSASS EHPNGEHNLG TEAGVTSPFE PVSPFNQSTD 360
  361 GETMVSSHQD DAFYVPATNH YDDIDDPDDL EPLGIEGSYI APVDRVRGGV LGSLLKLYQN 420
  421 QDDQYTKSQL SLNDSSIEQT PEPVDQAGKS DQKTGKKIYN PFHKHSKSQT NVSGANKSGS 480
  481 SMNLPNFKAT RPKAAAKNLV KAKNFKKKAA AEARITVHIA DLLQRQRFIL RLCKALMLYG 540
  541 APTHRLEEYM VMTSRVLEID GQFLYVPGCM IISFGDMTTR TSEVQLVRCN QGLNLWKLHG 600
  601 VHSVYKQVVH DIMSVEDANM EIDRILTGKN LYPPWVSVLL YAFCSSMVTP FAFGGDWINM 660
  661 AVAFGIGLCV GSLQFIVSQK SNLYSNVFEV TASIVVSFCG RALGSIPNSN ICFGATVQGS 720
  721 LALILPGYII LCGSLELQSR NLVAGAVRMF YAIIYSLFLG FGITLGAALF GWIYHDATNE 780
  781 TSCSKNISPW FRFIFVPCFS IGLGLINQAR WTQLPVMTLI SCCGYVVTYF SGKHFANSTE 840
  841 FTSAMAAFVI GILGNLYSRI WKGFAVSAML PAIFVQVPSG VASQSSLLAG VQSANAIVNN 900
  901 STTTVVQDDL SGSMSFGVTM IQVSIGISVG LFASTLFIYP FGKKRTGLFT L