YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49644490, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWLFGGKKS STDSQENTTP VEQNDDKLKQ TLGFDPSSIS NVSNVISVPG GLSPSQLHPL  60
   61 AGLERGVEYM DLEEEQLSSM EGSQGLIPSR GWTDDLCYGT GAVYLVGLGL GGSYGFIEGL 120
  121 KNIPPNSPGK LQLNTVLNHI TRRGPFLGNN AGVLALTYNL INSVIDSFRG KHDVAGSVAA 180
  181 GALTGAIFRS SRGLKPMGYA SALMAAAAAG WCGIKSVIL

Type	Start	End	Confidence
Cytoplasmic	1	95	0.80
Transmembrane Helix	96	117	0.52
Non-Cytoplasmic	118	171	0.51
Transmembrane Helix	172	188	0.41
Cytoplasmic	189	196	0.45
Transmembrane Helix	197	218	0.81
Non-Cytoplasmic	219	219	0.58