YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16588405
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGTEGPNFY VPFSNKTGVV RSPFEYPQYY LAEPWQFSAL AAYMFLLILL GFPINFLTLY  60
   61 VTIQHKKLRT PLNYILLNLA VADLFMVFGG FTTTMYTSMN GYFVFGPTGC NIEGFFATLG 120
  121 GEIALWSLVV LAIERYVVVC KPMSNFRFGE NHAIMGVAFT WIMALACAAP PLFGWSRYIP 180
  181 EGMQCSCGVD YYTLKPEVNN ESFVIYMFVV HFTIPLTVIF FCYGRLVCTV KEAAAQQQES 240
  241 ATTQKAEKEV TRMVIIMVIA FLICWVPYAS VAFYIFTHQG SDFGPIFMTI PAFFAKSSAI 300
  301 YNPVIYIVMN KQFRNCMITT LCCGKNPLGD DEASTTVSKT ETSQVAPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.98
Transmembrane Helix	39	61	0.92
Cytoplasmic	62	73	0.84
Transmembrane Helix	74	95	0.92
Non-Cytoplasmic	96	113	0.87
Transmembrane Helix	114	133	0.90
Cytoplasmic	134	152	0.79
Transmembrane Helix	153	173	0.94
Non-Cytoplasmic	174	203	0.95
Transmembrane Helix	204	227	0.86
Cytoplasmic	228	252	0.92
Transmembrane Helix	253	276	0.88
Non-Cytoplasmic	277	285	0.84
Transmembrane Helix	286	308	0.83
Cytoplasmic	309	348	0.93