YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47124844, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPSKGGNVG TGNSSGGNSV SKSKESGDGS WFVTLAIAVS LLKCLLIPTY HSTDFEVHRN  60
   61 WLAITHSLPV SKWYYETTSE WTLDYPPFFA WFEHVLAKVA HYVDPEMLKV ENLNYASQET 120
  121 VLFQRFSVII TDLLFIYAAR QCCKCVNGRK DRRDLLQKPP FVLAVLLLWN FGLLIVDHIH 180
  181 FQYNGFLSGI LLLSIARLYQ KRCVESAFLF AVLLNFKHIF LYVAPAYGIY MLRSYCFTGN 240
  241 NPDGSVRWRS FSCLRLVSLG LTVCSVFALS YGPFVYLGQL PQVLSRLFPF KRGLCHAYWA 300
  301 PNFWALYNAA DKALSIIGVK LQLLDPASIS TGTMTRGLVQ EFQHSVLPSV TPMATLVCTL 360
  361 ISILPSVFRL WRKPQGPSGF LHCLILCALG SFMFGWHVHE KAILLAILPL SILSVTSAKD 420
  421 AGIFLVLSTT GHFSLFPLLF TAPELPIKVL LMLIYTVFSI SSLRAMFRRE RALLSWLETL 480
  481 YLWGLVPLGA FCEVVYPLTP WHQHLPFVPL LLTSVYCSLG VSYSWVRLYI SALADLQPAK 540
  541 QKKTQ

Type	Start	End	Confidence
Cytoplasmic	1	158	0.60
Transmembrane Helix	159	181	0.87
Non-Cytoplasmic	182	217	0.72
Transmembrane Helix	218	237	0.79
Cytoplasmic	238	252	0.76
Transmembrane Helix	253	275	0.88
Non-Cytoplasmic	276	345	0.64
Transmembrane Helix	346	371	0.79
Cytoplasmic	372	377	0.50
Transmembrane Helix	378	399	0.89
Non-Cytoplasmic	400	444	0.47
Transmembrane Helix	445	467	0.79
Cytoplasmic	468	478	0.82
Transmembrane Helix	479	499	0.90
Non-Cytoplasmic	500	506	0.79
Transmembrane Helix	507	526	0.92
Cytoplasmic	527	545	0.87