YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GCNT4_DANRE
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRCAVLHRL RCKFYVFVVS LFVVVKLVYL KISMDNSIYI EPYGVTRRSL KPQPLDGINC  60
   61 TAIYDLEPVE IGKSLEMRRK KIVEVDDGRI ASFTADCKSY IEQRRYNEVL VTDEECNFPI 120
  121 AYSLVVHKNS AMVERILRAI YAPQNIYCIH YDQKSTKDFI AAMKNLESCF PNVFIASKIE 180
  181 SVQYAHITRL KADLNCLSDL LSSEVKWKYV INLCGQDFPL KSNYELVTEL RKLNGANMLE 240
  241 TSRPSKVKKQ RFQFRYQLKD VSYEYQKMPV KTSIAKDPPP HNIEMFVGSA YFVLSRDFVT 300
  301 YVMNNQLAKD FLQWSVDTYS PDEHFWASMA RVPGVPGELA RSEPDVSDLK SRTRLVKWNY 360
  361 LEERLYPKCT GTHRRSVCIY GAAELRWLLE DGHWFANKFD PKVDPVIIKC LEEKLEEKQL 420
  421 QQCLRRVS

Type	Start	End	Confidence
Cytoplasmic	1	11	0.75
Transmembrane Helix	12	30	0.77
Non-Cytoplasmic	31	428	0.99