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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50409605, gi|...
Protein type: Transmembrane
Type Confidence: 0.74
Topology Confidence: 0.28
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRDNLDNS NELNFGNNHP RTIYPQNSDK RQLEQKRRRV TRACDNCRQK KVKCDGKQPC  60
   61 IHCTVYSYNC AYDQPNIRNK KNSGIPIPSG DTSVISSYKA PLSQPKEIIT TSHVNSNLIL 120
  121 GQNLLNLLLP KLKLNLFDER PTQFDFEKFQ KVYQYVQSKS NGQTNLNEIT DLYLDGPTPL 180
  181 SSPSTLDRQP SVSSMDENLD GREFRIILPS KDIALQLIFT CWNKACVLFR FYHRPSLLEE 240
  241 VELLFGLDPM NYTDRQQKFL PFLYSILACG LLFSKLSNQS TPNNNTLEDD GFKYFLEARK 300
  301 LIDITDVGDI ISIQTIVMMI MYLQCSARLS TCYSYIGIAL RSAIKEGLHR NLSIFQNSKR 360
  361 ELDPIEVDTR KRLFYTIYKM DIYINSLLGL PRSLTEDEFD QELPEELDDE NITHAKYSYE 420
  421 KQQGKLSSSA CANHHTKLML ILSHIVRDLY PIKIKKQSSV DNPSPDRIHS KVTGLEQELK 480
  481 NWLDQLPTEL RPTDPHDVDS GKGIPEKFVL ANFYLHLAFL NCQIMLYRPF IHFISNGTHY 540
  541 QSADPRSLIR GRNCIKVARM VVKLANKMID KNLLVGTYWF SMYTIFFSIA CLIYYFHYAH 600
  601 DNNLNLSGVN YAGILFDDDL NIDMIKHDIE IGRKVLNCLK NNSNSSMRIY NILNNLFEQL 660
  661 NRRTAIKGKN DSVATHPPSI INNTTEESQN ASLNFDSINS FASMNSFEYP VSDSIKKETI 720
  721 LSDFRTASQQ QEQQQAAKQA TTKTPVDSKK SIDLLFNDGY TNVYNMQPQT NAIPTTYPSE 780
  781 ATSIQNLASD ASTTPKGPGN QQSGEYLPGV IDKLDAQIFG RILPPYMLEK NAKQVNNNLN 840
  841 LSNNNFNLEN VNDFQTQSIG DEQQMNVDNF DFSILGNSNL MDYLDPFNPI NESPYNFNRQ 900
  901 G

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle