YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50416388, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIFVSSQNV PIGYTVPPFP SLYWPLGPTS SDFQSLYLYY SFDIWKFTVF WSLILFGGFY  60
   61 LTAGLLAVFN QISNNYRHKI SNPILKGTIL GCIVLVLMYL LLGLAQGFIC GAIIGLLLLA 120
  121 IYKAGSLNMS TWIPFCWGIA EILFNVCCLY LTSLVIL

Type	Start	End	Confidence
Cytoplasmic	1	9	0.66
Transmembrane Helix	10	27	0.60
Non-Cytoplasmic	28	46	0.81
Transmembrane Helix	47	69	0.92
Cytoplasmic	70	87	0.71
Transmembrane Helix	88	122	0.85
Non-Cytoplasmic	123	130	0.49
Transmembrane Helix	131	154	0.86
Cytoplasmic	155	157	0.43