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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49653492, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.36
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSFPRNDT SSSSEDETDN YRSHIQIPSL DLANYRKQQK STSKTNLAKA GKKLKNNKSV  60
   61 RFPDLYSPRD TIISNASTTN NSSSDSELEQ DMVTGENSNL PNFNFSANQV HSPEYANEDD 120
  121 ANDDSGEEED TFEPPADFYA SEGSDEDMEA DNEGDNVEDK EEVVNEKEEI ADDLHSKSSK 180
  181 TSRESKSFNA GTKNSRRSLN SLQRNETDVT DQLKRTTSTT SSSKRSNSDK RTGFKDILRK 240
  241 FALVDQQYPE APSNRESEDL GEPQPSRSDT FLGNVLSMAG ESGGLVPGAT HFSREKTIDE 300
  301 EEEVGFEDED SDLIEMKKLD FAQLSNEAQN LISTHVPDLA NKLPEGTSSD QQLDYSDTSA 360
  361 SNLIKNDEET GNEATKKDDE FYTPNPDYFI RGDINNENDA DDYLMLDEHM DDIAPPKRVQ 420
  421 AGVLSSLLKL YQNPQEQQSS SSLTSKSTYG GNTLADDSNY SYSDPKAAST LDFTKLKNDF 480
  481 KNGPKRMANK IPGRKHGAQK QDTQDESAQK YYDEDGNEIA APNLPSFHNA KPKAPKKIAA 540
  541 AGKVPSKVHK KLKEHKRQQD QQLRITVHIA DILHRQRFIM RMCKALMMFG APTHRLEEYM 600
  601 TLTSRVLEID GQFVYFPGCM IVSFGDASTR TSEVHLVRCA QGLNLSKLSD THRIYKGVIH 660
  661 DILPVDEAST QLEELLKKKN RYSPWLCVFL YGLGSSMVCP FAFNGGWYDV PIAFGVGLCV 720
  721 GYLQFFVSSK SNLYSSVFEV TASIVVTFIA RAIGSIHDGE YFCFSAIAQG SLALILPGYI 780
  781 ILTGSLELQS RNIVAGSVRM FYAIIYSLFL GFGITLGASL YGWVDSNAIS TTKCKNSIKQ 840
  841 DEFKILFVPL FSACLGLINQ ARWRQLPIMI VIACAGYVGT FFAGKHKQFS EVTEFTACIG 900
  901 AFIVGILGNL YSRIGKGMAV AAMLPAIFVQ VPSGIASQST LLAGVESADK LTSSNSTTTD 960
  961 TSTASDSAGS LAFGATMVKV SIGISVGLFA SALFVYPFGK KKTGLFSL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle