YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26449875
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMRGVDFKW YDGFFLSMLA TSVIIVAVNW NRYRACEYPL HIWIVVDYTT VFIFRVFMFV  60
   61 DNGLASGLGL DFGSQQRNAM FCGRVVVLSV LSLLLYPFLW AWTVIGTQWF TKSKTCLPEE 120
  121 GQKWGFLIWL MFSYCGLLCI AFICVGKWLT RRQVHLLRAQ QGIPISEFGI LVDMIRVPDW 180
  181 AFEAAGQEMR GISQDAATYH PGLYLTPAQT EAVEALIQEL PKFRLKAVPD DCGECLICLE 240
  241 EFHIGHEVRG LPCAHNFHVE CIDQWLRLNV KCPRCRCSVF PDLDLSALSN LQSSGTEQHS 300
  301 QVNTETSEAR YIRSQPQSES YFLRVQSLIH PVHADTALET AENGGVPPVL TDLSPSRR

Type	Start	End	Confidence
Cytoplasmic	1	9	0.89
Transmembrane Helix	10	30	0.92
Non-Cytoplasmic	31	39	0.82
Transmembrane Helix	40	59	0.76
Cytoplasmic	60	79	0.69
Transmembrane Helix	80	101	0.93
Non-Cytoplasmic	102	126	0.89
Transmembrane Helix	127	149	0.93
Cytoplasmic	150	358	0.94