YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49650020
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.94
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	131	0.99
Transmembrane Helix	132	152	0.95
Cytoplasmic	153	161	0.78
Transmembrane Helix	162	183	0.90
Non-Cytoplasmic	184	195	0.87
Transmembrane Helix	196	216	0.89
Cytoplasmic	217	345	0.96
Transmembrane Helix	346	370	0.82
Non-Cytoplasmic	371	380	0.73
Transmembrane Helix	381	403	0.90
Cytoplasmic	404	473	0.82
Transmembrane Helix	474	494	0.60
Non-Cytoplasmic	495	511	0.86
Transmembrane Helix	512	533	0.90
Cytoplasmic	534	544	0.83
Transmembrane Helix	545	565	0.86
Non-Cytoplasmic	566	577	0.78
Transmembrane Helix	578	599	0.88
Cytoplasmic	600	623	0.85
Transmembrane Helix	624	642	0.91
Non-Cytoplasmic	643	660	0.88
Transmembrane Helix	661	683	0.88
Cytoplasmic	684	693	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVSILLAAA TAASAIALPQ LHRRHEGHDE TEATGITNTP HSNDKTNIND INDNNDATSP  60
   61 SAHSHSNTHS GNSTHDNEDM MEPNPASMNG GHHSHGLPIL AHPEKLEPQQ LAYWTAYDPT 120
  121 NFFNTETPGQ SLLTWHILMV ATAWIGVYPI AVMLSSAKSG LYLPVQTAQV VMVALGAIFL 180
  181 GMYGSSPEVE KMYPGAIYGK FTVLVLILSL VHYLAALLTS LAYRDTTPND SDPRQLAEAF 240
  241 QLQPYHRVSD SDSDHTLNGT PSATPSVPQP SKFRISEDAE DDTPMSPCQY YGDDECGGAE 300
  301 AASSSSMRPQ PFEQKMEDKW VARLMANSHV SSTVDRFGAL ANFVHTYLQG IMLLVAFAYV 360
  361 ICGVVTGCRL GMGHNVFNIL AHFIKGGVFT VLGLFTFARY VGVFTDKGWA WNLNQEQVNS 420
  421 VKMLHSRSRA NSRGSRRRAR SSPPAPTKMT ALSVARTAVS KVFGVLAFLK PQSFTFEFVE 480
  481 SALILIYGVP NIFMEHLASK DGHWTPADLQ HASIAFMFIG GGLSGVLLES ALVRKLLSSK 540
  541 TYPMSFNPFP ALTIFWTGIL MSQHAQALPL STAIHTQWGY LLAIGAVFRG ITYLQYFIVY 600
  601 SQALARLDGG AEMNVDQLTL PSRPFTEIVA SFCLISGGLV FMQSNRETVE AFVYRGIDSM 660
  661 FTLNVTVGVT SFIMAWELVV LAIKGWASRR KRV