YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49650575
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.26
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.95
Transmembrane Helix	48	67	0.86
Non-Cytoplasmic	68	86	0.84
Transmembrane Helix	87	108	0.93
Cytoplasmic	109	116	0.84
Transmembrane Helix	117	137	0.90
Non-Cytoplasmic	138	143	0.74
Transmembrane Helix	144	164	0.87
Cytoplasmic	165	175	0.77
Transmembrane Helix	176	198	0.89
Non-Cytoplasmic	199	206	0.77
Transmembrane Helix	207	226	0.96
Cytoplasmic	227	257	0.88
Transmembrane Helix	258	278	0.92
Non-Cytoplasmic	279	298	0.87
Transmembrane Helix	299	320	0.85
Cytoplasmic	321	327	0.68
Transmembrane Helix	328	347	0.88
Non-Cytoplasmic	348	354	0.63
Transmembrane Helix	355	376	0.73
Cytoplasmic	377	389	0.56
Transmembrane Helix	390	405	0.26
Non-Cytoplasmic	406	431	0.50
Transmembrane Helix	432	451	0.94
Cytoplasmic	452	524	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAPNLSPAS IRRYFATRLP TLIPQKLTPE EKKLLNPFPA LALINKKTWL FIACAFCGWT  60
   61 WDAFDFFSVG LVAPEIAKSL NRSVTDITWG ITLVLMLRSI GAVVFGIASD RYGRKWPFIV 120
  121 NLLCFIALEL GSGFVQTYKQ FLGVRAIYGI AMGGLYGNAA ATALEDCPPQ ARGIISGFLQ 180
  181 SGYALGYLLC VVFTRAIADT SPYGWRALFW FGSGPPVLFI IFRYFLPETE TYLASKASQE 240
  241 EAGIEKKFWN GIKVTFKNYW LMFIYLVILM AGFNFMSHGS QDLYPTMLKN QRHFSADRST 300
  301 VTNCVANFGA IAGGMLIGHF STALGRRLSI MISCVIGGAL IYPWAFVGNS AGTNAGVFFL 360
  361 QFFVQGAWGV VPIHLSELSP PELRSSMVGI AYQMGNLASS ASSTIESKIG ERFPLKNAKG 420
  421 EFEKGFYDYG KVMAIFMGCV FGFVLIVTFV GPENRGATML TEDAQMMVDA EHRLDAEEKG 480
  481 DFENLERVDS EGKQMDNFVE EVAEPEGVYT GSHPPQYDSP YESK