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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49650647, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.34
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYQNFNLLD VDDDDFEPKG PGGSQHQHQP GPSSSRPTLT PFDSIQDGDT FIEADDYDAY  60
   61 GDSGKRPMEK PPQRGNSMYG NMKARLGFGD PDYSEMDLPL NERTPYERDA ESINAGISDA 120
  121 RPSGTMNRTK IRSKVKKSTM SMPDFDIRRM WNRMRGHQEE RGPDGPRVVH LNDPDANSAL 180
  181 RYGDNHISTT KYNLFTFLPK FFFEQFSKYA NLFFLATACI QQVPNVSPTN RWTTILTLLV 240
  241 VLIVSAVKEL VEDFKRAAAD KELNSSTAYV LEGSSFVARK WIDVAVGDIV RVDSEEPIPA 300
  301 DVVLLASSEP EGLCYIETAN LDGETNLKIK QAHGDTAPYV SPSELSRVRG QLDSELPNSS 360
  361 LYTYEATLKI DGRPPIPMSP EQMLLRGATL RNTGWIHGLV VFTGHETKLM RNATAAPIKR 420
  421 TAVEHMLNIQ IIFLFTILIV LAVVSSLGNV IMIRVNTNQL SYLMLADLNL GAQFFLDLLT 480
  481 YWILFSNLVP ISLFVTVEII KFYQAYLISS DLDMYYRPTD TPAVCRSSSL VEELGQIGYV 540
  541 FSDKTGTLTR NIMEFKACSI AGRAYAEEVP EDQRATEDDD NNADDPDSFG FHDFNELKRS 600
  601 TTQHASAGVI QEFLTLLATC HTVIPEIRDD GSIKYQAASP DEGALVDGAA TLGYAFAMRK 660
  661 PKTIGVDVKH DTDTNPAESR EYELLNVCEF NSTRKRMSAI LRCPDGKIRL YCKGADTVIL 720
  721 ERMAPNNPYV DATMRHLEGF AAEGLRTLCL AVRVVPDEEY AAWNKRFVEA QTTLNNRAQK 780
  781 LDDCAEDIEK NLFLLGATAI EDKLQDGVPE TIHTLQSAGI KVWVLTGDRQ ETAINIGMSC 840
  841 KLLSEDMSLL IINEEDSAST LDNIQKKLAA LQGLRENDSD SLALVIDGKS LGFALEDEME 900
  901 EIFLELALLC KAVICCRVSP LQKALVVKLV KRYTSDLLLA IGDGANDVSM IQAAHVGVGI 960
  961 SGMEGMQAAR SADVSIGQFR YLRKLLLVHG AWSYQRLSKA ILYSFYKNIA LYMTQFWYTF1020
 1021 FNGFSGQSIY ESWTITFYNV FFTVLPPFVI GIFDQFISAR LLDRYPQLYQ LGQHRAFFNV1080
 1081 RQFWEWVANG FYHSIILYFG SCGVYMTSRE LPNGLTTDHW VWGTALFTSC ILTTLGKAAL1140
 1141 VTNMWTKFTL IAIPGSFLLW IGIFPAYATV APMINVSREY RGVLAHTYPT IVYWAMTFLL1200
 1201 PTICLLRDML WKYYRRMYDP QAYHYVQEIQ KYNIADYRPR MEQFQKAIRK VRQVQRMRKQ1260
 1261 RGFAFSQADE GQEKVIRAYD TTQQRGRHGE MRHADEYRTD EHSDDGYNNN NNNNNPFDDS1320
 1321 AHKNLAPNPF ELE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle