YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|29690388
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTQPQTPLP QVGKLVSVVP VGLKEAALDS PTFRATTLHF SDQIEYTERW LDGYAKAASR  60
   61 LATELAALEG IVGAFLSYST NPLMVSEAIL DHDYTLSSMR RCGESSKDMW NGLVFAARKI 120
  121 ENIVSEPIRI FIQEDLRSFK VNNRRILDQT QKQYDTLQAR YSSQSKSKEP SALREDAFQL 180
  181 HEARKAYLKA SMDFSVQAPQ IRNALDRLLI RVSFDQWREL KTLHSNHAGV FAKWSQEMDR 240
  241 IKGWVHEMEG SERYSKRELF SARSQIEDAA EVAARPSREL EDYSVSTVPY LGSRPLSFNT 300
  301 KDARPEKQGW VNLRTVSSRP TRTTWVRRWA FLKNGIFGCL VQGMRTGAVE ETERIGVLLC 360
  361 SIRPAFQEER RFCFEVKTKS NNIMLQAETQ KELMDWISAF EAAKRKALEN PASTDVSVSG 420
  421 KPTVQDPAFA ISQPPAPEFA ADPTDYLTPN VSDEQISSDR NGMLPLPDRD PSTFRNSSDL 480
  481 GGHRRLTLDP ESPAKDHTSR LIQKLDLHRR SNNAVQSSTS IPGAGGGISS LISASHSAIL 540
  541 SAEIDTNKLL PPSTLTPMTL ANPPAPTNLS KATVLVSNER GLGVGLGDRT GGMPSGMMAN 600
  601 LWGSSNWGFM NKLELEYAGV SEEKIQNQEP GTADLDTTGG SAGSKLKARH RPTVSLDGDA 660
  661 SKVQRAILGI AHEYPDYYPP QLKIQDAQFR LLFPNVKKEE PLVLVFRATW NPNDQQEFPG 720
  721 RAYVTTRNIY FYSHYFGLVL TTSVSLEKIK EVTGAPGRDC DFLFLHTIPP PGNDTPGRIT 780
  781 VKTFLEPLKV LQKRLNFLIH DSTAVEPMEL EAIFKTLNKM ATEQFTRTPS LDSWEDVTVG 840
  841 DKTCEAEDTK KATLQSAIYI DKNLDLNRAR AGSDAPKFRL PNQPVQYVPQ GDLHLAAEKE 900
  901 FNLSTKAVFH ILFGDKSAVW QLLLYQRRAQ NIKQGPWVRD ASRHLKRDFQ YQIETTDIFG 960
  961 RTDVKAISDY QLIDVLNDHL CYVITDKRTP WHLPFRRNFR LVNKIVITFV AKGKCKLSVY1020
 1021 TKVEWLWSPY GIQRVINKQA MGDLEEDAMD LVDLVGDQVR KLGVHSRTKK AITIFGHVGR1080
 1081 QALTSQFNIG PDAKVERRRP RTQRTLFQML YETFVSFFQS AISSIIIWIF GSLRWVFKTA1140
 1141 NANKIIIALL ASSVLLNGFY STRATADWWH ERNVENFMAR MGIHPDQVMT KAIYMRDIDE1200
 1201 EIANSTVGQS DNVSDCFYTF QQQTIRDSSV PVSLSTSSRE AVARGATRRI QQTRERLGVY1260
 1261 RYNLLVALRV VNSIEKEVLQ SEWERWLQQE LRRCRQVENL LTADGDDESG TEGSQTVLRG1320
 1321 LDGDVRQWYE TYCSSCQKEQ ERFVTEAQT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle