YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50728342
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVEEAAILL RGSALPGKGG RWNGCMGAMQ EAEGSSTDMP PLCISMRVVI HHGHVVVQSH  60
   61 QYKPGLYDSC KLDFHVTSAA SFDMHVTAVC GHRAEPTGTG STKHAHSTLA GLWHRSGSAR 120
  121 ALTKQCRESG ERVGRARQGS RAGRDTDVPC ASPQAAALWL PMTSNQEDFF RDYLKMLANI 180
  181 VILSLLISVS LAFWIVSMTA STYYVAQWDI VFLFYKEIHT VLKGSRGWEG RTSDSKYLLQ 240
  241 DMKPLENKLC PTSVCRAMDQ GAHISFYLPG NIRPISPWRW LFSVAVPVVI ATQGFKKRSL 300
  301 DHSGALAGLV VGFILTVANY SFFTSLLVFF VTSSKLTKWK KDIKKRIDSE YKEGGQRNWL 360
  361 QVFCNGGIPT ELAILYMIES GPGEIPIDFT KYYTASWMCL SLLGALACSA GDTWASEIGS 420
  421 VMSKSKPRLI TTWKQVPVGT NGGVTLVGLL SSFLGGMAVG IAYYITQLVF VSDLDVSAPQ 480
  481 WPIIVFGAAA GLLGSILDSY LGATMQYSGF DKNTSMVVNY QTRDCQHISG KPILDNNAVN 540
  541 LFSSLLVALV FPAVALCFWP RH

Type	Start	End	Confidence
Cytoplasmic	1	176	0.92
Transmembrane Helix	177	198	0.87
Non-Cytoplasmic	199	275	0.80
Transmembrane Helix	276	295	0.80
Cytoplasmic	296	303	0.62
Transmembrane Helix	304	329	0.81
Non-Cytoplasmic	330	392	0.59
Transmembrane Helix	393	416	0.82
Cytoplasmic	417	437	0.51
Transmembrane Helix	438	465	0.79
Non-Cytoplasmic	466	480	0.50
Transmembrane Helix	481	502	0.88
Cytoplasmic	503	537	0.52
Transmembrane Helix	538	559	0.91
Non-Cytoplasmic	560	562	0.47