YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50728590
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK  60
   61 VFLENVIRDA VTYTEHAKRK TVTAMDVVYA LKRQGRTLYG FGGRFARPYE RRARGRPRGT 120
  121 ADAAAAAREG DGERLQRSVS GCGRDRAATP RGKLGPSRTN TARLSGGAAR PARTEKPPSA 180
  181 AVRPAVRNLP RQQHTTQALV ESPHSELFLE TVGGSEKSLW VSLRCSARFL GAGLLSLGLV 240
  241 AVGLLGQQHG LDVGQHPALR DGHLAQQLVE LLVVADGQLQ VAGDDARLLV VAGRVARQLQ 300
  301 DLGRQVLQHG RQVHRGAGAH PLRVVALAQQ PVHAAHGELQ PGPRRARLGL GARLPALLPA 360
  361 PRHRRSVAQK LNCQLNRNQN TQQLPALARA PLYPFPVARP PAPDRRSCPH GERAPNGVAN 420
  421 LGPTNSDGRP SRPRPSLCSQ PMAGRKGREQ GGIPPTN

Type	Start	End	Confidence
Cytoplasmic	1	226	0.64
Transmembrane Helix	227	246	0.64
Non-Cytoplasmic	247	457	0.95