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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50728592
Protein type: Transmembrane
Type Confidence: 0.54
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSPSSSSL KEERAGGTFW KGKWAILDAD KHHGMNDKKL QQQTGGKWLS HTHLLQHAEY  60
   61 FECIISEKLS PGNTVAQWEV TFQRLLVRPY AITPARAPPH PHWRRRTQAL GMSGRGKGGK 120
  121 GLGKGGAKRH RKVLRDNIQG ITKPAIRRLA RRGGVKRISG LIYEETRGVL KVFLENVIRD 180
  181 AVTYTEHAKR KTVTAMDVVY ALKRQGRTLY GFGELCSSAL APRGVPPFPR KRLAASASPQ 240
  241 AGSHRAAFGL PLAPGRALDF CSRARGTADA AAAAREGDGE RLQRSVSGCS RDRAATPKGK 300
  301 LGASRTNTAR LSRGAARPAR TEKPPSTAVR PAVRNLPRQQ HTTQALVESP HSELFLETVG 360
  361 GSEKSLWVSL RCSARFLGAS LLGLGLVAVG LLGQQHSLDV GQHPALRDGH LAQQLVELLV 420
  421 VADGQLQVAG DDARLLVVAG RVARQLQDLG RQVLQHGRQV HRGAGAHPLR VVALAQQPVH 480
  481 AAHGELQPGP RRARLGLGAR LPALLPAPRH RRSVAQKLNC QLNRNQNTQQ LPALARAPLY 540
  541 PFPVARPPAP DRRSCPHGER APNGVANLGP TNSDGRPSPP RPSLCSQPMA GRELRWLRPL 600
  601 AAAAHGQSHV PVRSGGSEPA MARTKQTARK STGGKAPRKQ LATKAARKSA PATGGVKKPH 660
  661 RYRPGTVALR EIRRYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSSAV MALQEASEAY 720
  721 LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle