YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56119026, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNELTELDNA GSPEPGLRLR KGHMSDSATT QTAFEEDSSE QRLLLVEPPL SSNQENSSED  60
   61 SNHNDESPQE DEGFMGMSPL LQAHHAMERM EEFVCKVWEG RWRVIPHDVL PDWLKDNDYL 120
  121 LHGHRPPMPS FRACFKSIFR IHTETGNIWT HLLGCVFFLC LGIFYMFRPN MSFVAPVQEK 180
  181 VVVGLFFLGA ILCLSFSWLF HTVYCHSEGV SRLFSKLDYS GIALLIMGSF VPWLYYSFYC 240
  241 NPQPCFIYLI VICVLGIAAI IVSQWDMFAT PQYRGVRAGV FLGLGLSGVI PTLHFVISEG 300
  301 LLKAATMGQI GWLALMACLY ITGAALYAAR IPERFFPGKC DIWFHSHQLF HVFVVAGAFV 360
  361 HFHGVSNLQE FRFTVGGGCT EEEGMQ

Type	Start	End	Confidence
Cytoplasmic	1	146	0.98
Transmembrane Helix	147	167	0.95
Non-Cytoplasmic	168	181	0.90
Transmembrane Helix	182	204	0.90
Cytoplasmic	205	216	0.87
Transmembrane Helix	217	236	0.93
Non-Cytoplasmic	237	244	0.79
Transmembrane Helix	245	265	0.95
Cytoplasmic	266	275	0.79
Transmembrane Helix	276	297	0.91
Non-Cytoplasmic	298	309	0.76
Transmembrane Helix	310	329	0.95
Cytoplasmic	330	343	0.89
Transmembrane Helix	344	365	0.86
Non-Cytoplasmic	366	386	0.94