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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50737091
Protein type: Transmembrane
Type Confidence: 0.53
Topology Confidence: 0.37
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMDVLQTYS PILLCAVLVS LHCLQWHRSS HHLSTTRTEE GNPPPVQAWG GWIPHSSLLF  60
   61 QTVALRRVGL ATGRKPCRML LAPSSSCSIV TVSWGLPGHQ KHRCVHGSEG NRAGDSHSGI 120
  121 SSMSRGALPP QPGGGGDRSP SECPPSPAGL AERAFQRTWA FYKQNVSQCP QSLYLGQLGS 180
  181 RMDSSSLHQA ELHAAGALLW LKVLRDPLGS LERSVEIVTL IEMLTAGNYR GLPRVGFSTK 240
  241 GQGRLPGQLA NRTALRSGVL IDTATAVGNG VLGKSMLLKW DHVSGADYIE KRSLRGQSLD 300
  301 EDRPRRTAAV RTRSAEKPGM SVAAHRLHRG AGEMTYVFDV ACHDLSCLQE LSPRQHRCDC 360
  361 AMQLDGTAAQ SCSNMTLGLN KQRGVPRHPF LCCWYARYTK PSVGVSFSLP KVSLVMLMYH 420
  421 WSLPEMLRAP AKGLSGAQLS TCTAASLMRN TGEAAPRRAT CTTRHHPVGA GAPPLTNRPS 480
  481 PPPRTRPAHP PRAPPISFPG PAGTACARFH RPLGGGEGTL PPPRARIPSA SSLLRVRAAH 540
  541 PRTSRSALPL SRLLPSCLSC RSVPGRSGLR QVEERRQAAR NKRKEDAVIA SPPLKPSPGA 600
  601 LLGSFFIVGN MSTGESFESR FEKIDGTLKD PKSEVNVDCL LDGLDALVYD LDFPALRKNK 660
  661 NIDNFLNRYK DTVNKMRDLR MKAEDYEVVK VIGRGAFGEV QLVRHKSSRR VYAMKLLSKF 720
  721 EMIKRSDSAF FWEERDIMAF ANSPWVVQLF YAFQDDRYLY MVMEYMPGGD LVNLMSNYDV 780
  781 PEKWARFYTA EVVLALDAIH SMGFIHRDVK PDNMLLDKAG HLKLADFGTC MKMNKEGMVR 840
  841 CDTAVGTPDY ISPEVLKSQG GDGYYGRECD WWSVGVFLYE MLVGDTPFYA DSLVGTYSKI 900
  901 MNHKNSLTFP DDNEISKEAK NLICAFLTDR EVRLGRNGVE EIKRHLFFKD DQWAWETLRD 960
  961 TVAPVVPDLS SDIDTSNFDD IDEDKGEEET FPIPKAFVGN QLPFVGFTYY SNRRYLSVSA1020
 1021 ENSNDNRMGS SMDKSVMENM QKMIYDLEEQ LHNEMQLKDE MEQKCRSSNI TLDKIMKELD1080
 1081 EEGNQRKNLE LTVSQIEKEK MALQHKINDY QRKIEQESEK RRNVENEVST LKDQMEDLKK1140
 1141 ISQHSQITNE KITQLQKQLE EANDLLRTES ETAVRLRKGN TEMSKSLSQV ESLNRELQER1200
 1201 CRVLESAKLQ VEKDYYQLQA ALESERRDRS HGSEMIGELQ VRITTLQEEL KNLKNNLERV1260
 1261 EAERKQAQDR LNHSEKEKNN LEIDLNYKLK SLQDRLEQEV NEHKVTKARL TDKHQSIEEA1320
 1321 KSVAMCEMEK KVKEERAARE KAENRIVQAE KQCSMLDFDL KQSQQKVEHL LQQKERLEDE1380
 1381 VKNLSLQLEQ ETNKRIMAQN ELKAQAFEAD NLKGSEKQLK QEINTLLEAK RLLEVELAQL1440
 1441 AKQYRGNEGQ MRELQDQLEA EQYFSTLYKT QVKELKEEID EKNKETQRKM QELQNEKETL1500
 1501 TTQLDLAETK AESEQLARAL LEEQYFELSQ ESKKAASRHR QEMTDKDSII RRLEETNSTL1560
 1561 TKDVDLVTKE NSEMSEKMKK QEEEYKLKKE EEINNIRMQY EKSINNERTL KTQAVNKLAE1620
 1621 IMNRKDFKID RKKASMQDLR KKEKENRKLQ LELNQEKEKF NQMVVKYQKE LNEMQAQLAE1680
 1681 ESTYRNELQM QLDSKESDIE QLRRKILDLQ QGMDSTSVSS LQPDEIDGNL SESRLEGWLS1740
 1741 IPNKGNIKRH GWKKQYVVVS SKKILFYNDE KDKDQSNPSM VLDIDKLFHV RPVTQGDVYR1800
 1801 AETEEIPKIF QILYANEGEC RKDVEVESVQ PAEKTNFLNH KGHEFIPTIY HFPANCEACA1860
 1861 KPLWHVFKPP AALECRRCHV KCHRDHLDKK EELIAPCKVS YDVTSARDML LLASCQDEQK1920
 1921 KWVTHLVKKI PKNPPSTFVR ASPRTMSTRS SANQSFRKAV KNTSGKTS

YRC Informatics Platform - Version 3.0
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