YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STT3A_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.85
Transmembrane Helix	19	41	0.90
Non-Cytoplasmic	42	83	0.87
Transmembrane Helix	84	108	0.85
Cytoplasmic	109	114	0.80
Transmembrane Helix	115	138	0.85
Non-Cytoplasmic	139	144	0.79
Transmembrane Helix	145	164	0.90
Cytoplasmic	165	174	0.69
Transmembrane Helix	175	192	0.86
Non-Cytoplasmic	193	205	0.69
Transmembrane Helix	206	231	0.78
Cytoplasmic	232	240	0.81
Transmembrane Helix	241	264	0.90
Non-Cytoplasmic	265	271	0.82
Transmembrane Helix	272	291	0.95
Cytoplasmic	292	301	0.82
Transmembrane Helix	302	326	0.91
Non-Cytoplasmic	327	371	0.88
Transmembrane Helix	372	390	0.84
Cytoplasmic	391	395	0.46
Transmembrane Helix	396	430	0.73
Non-Cytoplasmic	431	518	0.54
Transmembrane Helix	519	539	0.87
Cytoplasmic	540	779	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALESPLPG TPTAMRNAFG NVLSVLILVL IGVLAFSIRL FSVIKYESVI HEFDPYFNYR  60
   61 VTQFLSKNGI YEFWNWFDDR TWYPLGRVIG GTVYPGLTLT AGTIWWGLNS LNIPLSVETV 120
  121 CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA 180
  181 LIFTFYLYIK TLNTGSLFYA TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR 240
  241 LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF 300
  301 KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH 360
  361 QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY IVMSVYFSGV MVRLMLVLAP 420
  421 AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI 480
  481 VKERSSKKGK KKEREPADKP SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA 540
  541 AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV 600
  601 IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV 660
  661 RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS YYRFVETDGK GYDRVRRTEI 720
  721 GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV