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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50738532
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDHSEERAT MIAAGDLQEF IPRGREHCRR HPGAHNLQPR ELQPASELCS SDGAAGLVGS  60
   61 LREVTIHERQ RESWQLRKGV SDFGEEVDYD EELYVASNMV IWSKGSKTEA SAAYKAFSVD 120
  121 SPVLQALWCD FTIQQEKSDK ADVSGGKEIV QKCVCILQSS CVNVHSIDGK DYVAALPFQV 180
  181 ANIWPTKFGL LLERSGSSHE VPPSPPREPL PTMFSMLHPL DEITPLVCKS GGVFGSARVQ 240
  241 YVADYTLRIV FVNAEPSIVM TYDTVQSLHT VWALRRVKPE EQNMVLKFSE QLGTPQNVAA 300
  301 SSSLTAQLRS LSKGDSPMAS PFQNYSSIHS QSRSVSSPSM QSRSPSISNM AALSRSHSPA 360
  361 LGVHSFSGVQ RFNSSSNIQS PRRHSITHSP ESTCSDSFLV TETEPIVPEL CIDHLWTEAI 420
  421 TKMREKNSQA SKVFITTDLC GQKFLCFLVE SQLQLRCVKF QESNDKSQLI FGSVTNIQAK 480
  481 DAAPVQGVDT LLVLEGSGNL VLYSGIVRVG KVFIPGLPAP SLTMSNQMPR PSTPLDSVST 540
  541 PSKTLNKHLG PLEESMLLSP VPELRDSSKL HDSTYVEDCT FQQHGTFIHA LRDPVHNREL 600
  601 SSNTMVRITI PEIATSELVK TCLQGVKAIL PKEIAVQMLV KWYNAYNAPG GPSYRLEWNL 660
  661 FVTCLMNMMG YNTEKLTWTR NDWEYLLSSD YHRNFESHPL SRVLGLDPLE VLAPKDDFLQ 720
  721 SLSLDYSTLL FTHIPAIFFV LHLVYEEFKL NLLMGEENRS LVVLLVQLAR DLKLEAYIDY 780
  781 YYRDYPALVK SSGQTCIIDQ GFMHHPAFFS AEPPSIFQWL SSCLKGGSVQ PYPYLPGICE 840
  841 RSKLVILSVA LYVLGDESAV SNEASPYLYK ITSGFTLRDL ETLPFGVALP IRDAIYYCRE 900
  901 QPASDWPEAV CVLIGRQDLS RQACDGNLLK SKSSVGPVLS SDSPSGAESE EDEDGMNNMN 960
  961 DEVMSLIWSK DLRVQEVRRL LQSARPVRVN VVQMPEASDH DFIEEKENRL LQLCQRTMAL1020
 1021 PVGRGMFTLF SYHPIPAEQL PIPKLNLTGR APPRNSTVDL NSGNIDVPPN MACWASFHNG1080
 1081 VAAGLKIAPA SRIDSSWIIY NKPKNAEQAN EYAGFLMALG LSGHLTKLAT LNIHDYLTKG1140
 1141 HEMTSIGLLL GVSAAKLGTM DMAITRLLSI HIPALLPPTS TELDVPHNVQ VAAVIGIGLV1200
 1201 YQGTAHRHTA EVLLAEIGRP PGPEMEYCTD RESYSLASGL ALGMVCLGHG SNLIGMSDLN1260
 1261 VPEQLYQYMV GGHRRFQAGM HREKHKSPSY QIKEGDTINV DVTCPGATLA FAMIYLKTNN1320
 1321 RSIADWLQAP DTMYLLDFVK PEFLLLRTLA RCLILWDDIM PSTEWVDSNV PQIIRENSIP1380
 1381 LHATELPSSE DLSLETLMQA HVYIIAGACL SLGFRFAGSE NKAAFNCLDK YATDFLKSLS1440
 1441 APTASIIGHY NLETCLSVLL LSLAMVVAGS GNLKVLQLCR FMHKKTGGEM NYGFHLAHHM1500
 1501 ALGLLFLGGG RYSLSTSNSS IAALLCALYP HFPVHSTDNR YHLQALRHLY VLAADPRLLI1560
 1561 PVDVDSNTPC YALIEVTFKG TQWYAETTEE MMAPTLLPEL HLLKQIRVKG PRYWELLIDL1620
 1621 SNETNHLKSI LSKGGVLYVK LRAGQLSYKE DPMGWRSFSA QTITHGNEAR SFKPEDISAF1680
 1681 TSDPALLLFA EYFCKPTVNM GQKQEMLDFF SSILYECVTQ EKPEMLPTYI AIDQAVRRLE1740
 1741 RGEMSETFEL GQIKLVLEFF NSRCHQGRMS RNPNRGLFMN SEFLPVMKCT IDKALDQWLQ1800
 1801 AGGDACLRSY LSRQPKDESQ QNMLACFLVY HSVPMPGQLA AGGLDGITNF SEMLLKFKQW1860
 1861 NVLVRALLRL APVLLKNPQS MVL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle