YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50742658
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYAACLPER RNFYGCPGLS SRHRRRMWQN QCQVDLVPSP SLISYPQTRS QAKSQITYPE  60
   61 PQEIQSPPVL LQPNPLVPSQ RLSVCQPCTW HTEPSALPGL DWSQQLPGAC PMETSISHGD 120
  121 DGAGTFWPLQ TGGDFAGSTG TSPSGVHCPV SPLYVFMRKE FFSLDKEAQV TKGEDSVENQ 180
  181 FCSHLGQEAR ARAEATNPST TTLTKSSPLA ALFPRYDLPR APGXXXXXXX XXXXXXXXXX 240
  241 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 300
  301 XAAILLSYCS ILCNYKAIDM PAHQTYGGSW KFLTFIDLVI QAVFFGICVL TDLSSLLTKG 360
  361 NDSQEQERQL KKLISLRDWM MAVLAFPIGV FVVTMFWSIY IYDRELVYPK LLDNFIPAWL 420
  421 NHGMHTTVLP FILIEMRTTH HQYPSRSCGL AAVCTFAVGY ILWVCWIHHV TGVWVYPLLE 480
  481 HLSPGVKIIF FAAVTVVINI FYVMGEVLNN YIWDTQKCIE EEKEKPKLD

Type	Start	End	Confidence
Cytoplasmic	1	294	0.66
Transmembrane Helix	295	318	0.73
Non-Cytoplasmic	319	334	0.86
Transmembrane Helix	335	358	0.82
Cytoplasmic	359	378	0.91
Transmembrane Helix	379	401	0.92
Non-Cytoplasmic	402	417	0.87
Transmembrane Helix	418	434	0.92
Cytoplasmic	435	447	0.74
Transmembrane Helix	448	470	0.90
Non-Cytoplasmic	471	484	0.88
Transmembrane Helix	485	505	0.88
Cytoplasmic	506	529	0.91