YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50746939
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.95
Transmembrane Helix	35	56	0.88
Non-Cytoplasmic	57	66	0.81
Transmembrane Helix	67	88	0.92
Cytoplasmic	89	98	0.88
Transmembrane Helix	99	120	0.87
Non-Cytoplasmic	121	162	0.91
Transmembrane Helix	163	183	0.90
Cytoplasmic	184	191	0.78
Transmembrane Helix	192	210	0.95
Non-Cytoplasmic	211	251	0.94
Transmembrane Helix	252	275	0.85
Cytoplasmic	276	287	0.91
Transmembrane Helix	288	310	0.89
Non-Cytoplasmic	311	338	0.88
Transmembrane Helix	339	364	0.86
Cytoplasmic	365	384	0.93
Transmembrane Helix	385	404	0.95
Non-Cytoplasmic	405	411	0.77
Transmembrane Helix	412	433	0.91
Cytoplasmic	434	491	0.97
Transmembrane Helix	492	514	0.89
Non-Cytoplasmic	515	523	0.72
Transmembrane Helix	524	543	0.96
Cytoplasmic	544	552	0.92
Transmembrane Helix	553	575	0.92
Non-Cytoplasmic	576	581	0.86
Transmembrane Helix	582	601	0.92
Cytoplasmic	602	735	0.93
Transmembrane Helix	736	753	0.52
Non-Cytoplasmic	754	1107	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPCGPALTF VRCLVRKKNI KGEGLEDSLC RCLSTLDLIA LGVGSTLGAG VYVLAGEVAK  60
   61 SDSGPSIVVS FLIAALASVM AGLCYAEFGA RVPKTGSAYL YTYVAVGELW AFITGWNLIL 120
  121 SYVIGTSSVA RAWSGTFDEL LGKQISHFFK TYFKMNYPGL AEYPDFFAVF LILLLSGLLS 180
  181 FGVKESAWVN KIFTAINILV LLFVMISGFV KGDVDNWRIS EEYLIDLSEI AENFSSYDYV 240
  241 TSIYGSGGFM PYGFTGTLAG AATCFYAFVG FDCIATTGEE VRNPQKAIPI GIVVSLLVCF 300
  301 MAYFGVSAAL TLMMPYYLLD EKSPLPVAFA YVGWGPAKYV VAVGSLCALS TSLLGSMFPL 360
  361 PRIVFAMARD GLLFSFLAKL SKRQAPLLAT LTAGVISGIM AFLFDLKALV DIMSIGTLLA 420
  421 YSLVATCVLI LRYQPSLTYE QPKYSPEKAT LAASKRESAV SESQINMIQE SHFSLQTLIN 480
  481 PSSLPTEQTA TTVNCLVGLL AFLVCGLSAL TTYGTHFIAN LEPWSICLLA TLVVSFIVTI 540
  541 LLIQRQPQNQ QKVAFMVPLL PFLPSLSILV NIYLMVQLSA DTWIRFSIWM ALGFIIYFTY 600
  601 GIRHSLEGRH SDGDGDSCSE NSGLQEKNPV EEVDEPENAN ESDKFLACER TNVSGAGPVK 660
  661 DSHAASYTGG ILHSSHLCPL TQHVHDSAGR RQPAVGASPR GRGPRSLHRR APPRPEAAAA 720
  721 PAPPQPGAPA ALTMRLWVLL SLLLLQETLP HVIGQSAKSK RPKEPGENKI KPINKKVKPK 780
  781 GLKMKEREPV DSSSKSQSIL MQVMDKGRFQ KLTATLSLSA GQSIELRCKG SNVTWSYPSY 840
  841 LDTFKDSRLS IKQLDRYGQL ILTNSTAADT GEYSCWLQLC NGNKCRKDET KTGSTYIFFT 900
  901 DKEELFVPTP SYFEIVYLNP DKPAVIPCRV TTPLAKVTLH REFPAEEIET DETNIIYDAK 960
  961 KGFVYQHPTS DHKGIVYCKA ESQGAPQISI KYHLLYVEVP RGPPSATIVA SPSRAKVSDG1020
 1021 IHVACTVLGE PDVDVNFSWQ YPGQELERPV IIQNFWRLIN RGTGHTTRIS KSVLIIEDFE1080
 1081 ARDAGNYICI AQNLQGTTTV ATRVELN