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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50747712
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.43
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLQAKGVML AVLLAKAVSF RSNRSKPVRE IDPKCGQKVH ETKPWSYFNL FTRIVGGNQV  60
   61 KQGSHPWQVS LKRREKHFCG GTIVSAQWVV TAAHCVSDRA DSTHFDCTYY TRKSEDERNL 120
  121 LKYLNVTAGE HDLRIRENGE QTLPVKYIIK HPNFDPRRPM NYDIALLKLD GTFNFSSSVL 180
  181 PACLPDPGEK FEAGYICTAC GWGRLRENGV LPQVLYEVNL PILNSMECSR ALSTLRKPIQ 240
  241 GDTILCAGFP DGGKDACQGD SGGPLLCRRK HGAWILAGVI SWGMGCARGW RGKFCGGDLP 300
  301 LPILIGSNNI RLKFVSDNKD YGTGFSMTYK ALTTGILPDS GCESLAVLFE EGVLQSMHYP 360
  361 ENYSNLAVCQ WIICAPEDHV IKLTYQTFEV EESEDCSYDA VTVYEDAGKE EEIGLAFNFG 420
  421 ILWGPITSMT FSSLLLQCKL KFTSRVSGVA VAKSCGFVLP APVLSSSSMM LVVFHSDETE 480
  481 TFEGFRATIT FVHVTDLDTL DSASVEVFEN TDMTEEEIQV TTDDVCGMPS NQPRFIFSRI 540
  541 IGGEEAVPHS WPWQVSIQIS DQHICGGAVL AKEWVITAAH CFNSKELYRD LWMVVTGIHD 600
  601 LTEQEYRQKR SVKQYIIHPS FNKTTMDSDI ALLQLAEPLE FNHYVHPVCL PAKEEVVQPS 660
  661 SVCIITGWGA QEEDREKSKK LYQLEVPILM LEACQTYYIN LPSRVTQRMI CAGFPLEEGK 720
  721 DSCTGDSGGP LVCPSKNGSG FYTLHGITNW GLGCGEVGSI SELLEGAPGK EGRERTLCGF 780
  781 SLWKFVTVWL CGELPSADGI SVTVLDRLDV VLLYSMGTRG LKQAAICACG PPAVGALCCR 840
  841 ACRSAFCHCR AAGGTRALHR KPRAARFVLQ GAERRRRSRA ESGRRTTRLC RPAGSAARER 900
  901 GSARRSPGAG GQRARRCCRR PGAAAMEAFS GTPVVVAVAA VAATVLLLLL LRGAGRRPGR 960
  961 PVTLRDPQAK YPLPLVGKEE ISHDTKKFRF GLPSPDHVLG LPVGQHVYLS AKINGNLVIR1020
 1021 AYTPVSSDET KGYVDLIIKV YYKNVNPKFP EGGKMSQYLD SMKIGDVIDF RGPNGLLVYK1080
 1081 GSGTFMIKPD KKSEAQRKFA KHLGMIAGGT GITPMLQLIR HITSDPKDST KCYLLFANQT1140
 1141 EKDILLRAEL EDIAKRHPDQ VRLWYTLDRP PQDWKYSSGF VTADMIKTHL PPPGSETLIL1200
 1201 MCGPPPMIQF ACQPNLDKLG YPKSSTFSY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle