YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TGD1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQTCCIHQS FCFPHRVFPR FDASIGIKPP KLCQVGFIGK TQSYGISSPI RQRRLYVNLN  60
   61 ANDGHPSMSM LEEETSTENN APSQEAELPF SKWSPSKYIW RGLSVPIIAG QVVLRILKGK 120
  121 IHWRNTLQQL ERTGPKSLGV CLLTSTFVGM AFTIQFVREF TRLGLNRSIG GVLALAFSRE 180
  181 LSPVITSIVV AGRMGSAFAA ELGTMQVSEQ TDTLRVLGAD PIDYLITPRV IASCLALPFL 240
  241 TLMCFTVGMA SSALLSDAVY GISINIIMDS AHRALRPWDI VSAMIKSQVF GAIISVISCS 300
  301 WGVTTTGGAK GVGESTTSAV VMSLVGIFIA DFVLSSFFFQ GAGDSLKNCV

Type	Start	End	Confidence
Cytoplasmic	1	97	0.58
Transmembrane Helix	98	117	0.74
Non-Cytoplasmic	118	136	0.47
Transmembrane Helix	137	157	0.89
Cytoplasmic	158	174	0.45
Transmembrane Helix	175	197	0.54
Non-Cytoplasmic	198	233	0.41
Transmembrane Helix	234	268	0.66
Cytoplasmic	269	283	0.51
Transmembrane Helix	284	309	0.78
Non-Cytoplasmic	310	316	0.51
Transmembrane Helix	317	339	0.87
Cytoplasmic	340	350	0.54