YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX10_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.97
Transmembrane Helix	36	57	0.89
Non-Cytoplasmic	58	70	0.71
Transmembrane Helix	71	93	0.88
Cytoplasmic	94	110	0.87
Transmembrane Helix	111	132	0.92
Non-Cytoplasmic	133	152	0.88
Transmembrane Helix	153	172	0.92
Cytoplasmic	173	180	0.81
Transmembrane Helix	181	204	0.89
Non-Cytoplasmic	205	212	0.81
Transmembrane Helix	213	235	0.87
Cytoplasmic	236	255	0.92
Transmembrane Helix	256	274	0.85
Non-Cytoplasmic	275	294	0.69
Transmembrane Helix	295	315	0.83
Cytoplasmic	316	332	0.80
Transmembrane Helix	333	355	0.92
Non-Cytoplasmic	356	379	0.86
Transmembrane Helix	380	403	0.77
Cytoplasmic	404	408	0.70
Transmembrane Helix	409	431	0.86
Non-Cytoplasmic	432	437	0.74
Transmembrane Helix	438	461	0.90
Cytoplasmic	462	487	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDAERTTND PVDRIEKVTW RDLQDGSFTA ELKRLICFAA PMAAVVIIQF MIQIISMVMV  60
   61 GHLGRLSLAS ASFAVSFCNV TGFSFIIGLS CALDTLSGQA YGAKLYRKLG VQAYTAMFCL 120
  121 TLVCLPLSLL WFNMGKLIVI LGQDPAIAHE AGRYAAWLIP GLFAYAVLQP LIRYFKNQSL 180
  181 ITPLLVTSSV VFCIHVPLCW LLVYKSGLGH IGGALALSLS YWLYAIFLGS FMYYSSACSE 240
  241 TRAPLTMEIF EGVREFIKYA LPSAAMLCLE WWSYELIILL SGLLPNPQLE TSVLSICFET 300
  301 LSITYSIPLA IAAAASTRIS NELGAGNSRA AHIVVYAAMS LAVMDALMVS MSLLAGRHVF 360
  361 GHVFSSDKKT IEYVAKMAPL VSISIILDSL QGVLSGVASG CGWQHIGAYI NFGAFYLWGI 420
  421 PIAASLAFWV HLKGVGLWIG ILAGAVLQTL LLALVTGCTN WKTQAREARE RMAVAHESEL 480
  481 TESELPI