YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18176020, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCFSSATPH RHHLLLSSPS TSKSLLRFPS SYLKPSPSLL FHGSSRSLLS CSDGSNNRPP  60
   61 PSGDTVPNNF CIIEGSETVQ DFVQMQLQEI QDNIRSRRNK IFLLMEEVRR LRVQQRIKSV 120
  121 KAINEDSELE ATEMPEITSS IPFLPNVTPK TLKQLYSTSV ALISGIIFFG GLIAPNLELK 180
  181 VGLGGTSYED FIRSLHLPLQ LSQVDPIVAS FSGGAVGVIS TLMLIEVNNV KQQEKKRCKY 240
  241 CLGTGYLPCA RCSASGVCLS IDPITRPRAT NQLMQVATTK RCLNCSGAGK VMCPTCLCTG 300
  301 MVTASEHDPR FDPFD

Type	Start	End	Confidence
Cytoplasmic	1	154	0.94
Transmembrane Helix	155	175	0.87
Non-Cytoplasmic	176	206	0.91
Transmembrane Helix	207	227	0.90
Cytoplasmic	228	315	0.87