YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22136914, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL  60
   61 QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK GKLDMTQKIS ETSPEIATGG 120
  121 GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV 180
  181 LNEWQKTMMD LPAGLRQAYE MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR 240
  241 MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA 300
  301 PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL 360
  361 QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL RYQLLCGFER GVSSHFDVIG 420
  421 VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI 480
  481 SKNAIVSGLL GKKQEDSVSD SPPPKARRKR IVRKKVAASA S

Type	Start	End	Confidence
Cytoplasmic	1	279	0.74
Transmembrane Helix	280	300	0.81
Non-Cytoplasmic	301	349	0.87
Transmembrane Helix	350	369	0.80
Cytoplasmic	370	377	0.79
Transmembrane Helix	378	398	0.84
Non-Cytoplasmic	399	412	0.83
Transmembrane Helix	413	434	0.82
Cytoplasmic	435	521	0.91