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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50749558
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSSCPTS RTDHELQPGV SSQTHDLTSE HSYMLQRNEA VLGALGLPAA RTQPVLSKQG  60
   61 YTMDGIVDTG FLPSLKMTSQ PTPWALQPAP SDCCDHLQAS PAADTVKVLS EGQGKCCLQV 120
  121 AGLLTQLGCH GLHCLLLHGL SGDRLVSRGQ SMQLLAEDKT KLAERSNKVP LVYQIDVPGG 180
  181 DNAEKEPPRS PHGLQSCYPS EAGLPAPPGD TLSPVPYSFL LLDLSLEVKT FLRSRRSVPL 240
  241 RPPCVRSGGV RWGTRCGAPS EPICAAGGLR GPVESQQRPP PCSSGAVSWQ PPVATAPALS 300
  301 VILVRSRAVP LSQLQLGQAT STAPADKLVC CQLRVAMSSS HLSNRAESHF RSPEEHELEA 360
  361 VGKKVWDNPV YNGSPSTSLK IRTIYNPKSI LENPYEGFEE VRDPVPYQEE QNKTMEGKTS 420
  421 PFRKCCFYIF RGIRGLWGTT LTENTAENRE LYVKTTLREL LVYIVFLVDI CLLTYGMTSS 480
  481 SAYYYTKVMS ELFLQTSSDS RVSFQSIGSM ADFWVYAQGP LLDNLYWTKW YNNESLAAHN 540
  541 TQSYIYYENL LLGVPRMRQL KVKNNSCVVH DDFKEEISGC YDVYSEDKEE KVSFGLINGT 600
  601 AWRYHSEEEL GGSSHWGRLT SYSGGGYYID LKLTREESAE ALQILKEKLW LDRGTRVVFI 660
  661 DFSVYNANIN LFCVLRLVVE FPATGGAIPS WQIRTVKLIR YVSAWDFFIV ACEIVFCVFI 720
  721 FYYVVEEILE LRIHRLQYFT SIWNILDVVV ILLSIVAIGF HIFRTIEVNR LLGELLKHPE 780
  781 TYADFEFLAF WQTQYNNMNA VNLFFAWIKI FKYISFNKTM TQLSSTLARC AKDILGFAIM 840
  841 FFIVFFAYAQ LGYLLFGTQV ENFSTFVKCI MSARVYLPGL FQCFTQFRII LGDFDYNSID 900
  901 NANRVLGPVY FVTYVFFVFF VLLNMFLAII NDTYSEVKEE LSSQKDELQL SDILKQSYNR 960
  961 TLMRLKLKKE QISDVQKALQ NGTKELGFED FKNSLKELGH ADHEITAAFS RFDKDGNYVL1020
 1021 DEEEQQQMKH DLEAKRVALN TEIENLGKSY GGNNLDENLS YVEAKNNYAN KASWVSKEEF1080
 1081 QVLLQRVLLL EQSIHSIGSK IDAVVSKLEV LERNKLETKD LMGKPLDNGR KEEEPSQEEL1140
 1141 LSQSLDQLGK EAAEGWGAGC RRPASGKAGE AKEQWCSSWA IQQGQSAAGR SQEYKGFIKK1200
 1201 PQKDLPCIGP EEAIPVFSTI AISKVGEKIR SENGTIKNTM RCSGKDKYQA VSLLNEISID1260
 1261 INMEQIPSQT LLALDSCQQL HKGLSCTHTN TEAGAGALVY NETIVLGNRR LRRNRRQTGV1320
 1321 KPTVSLSHGA KIREAADGQR RPGGLRDRRG AHSLGGEAGR VALSEDGTVR SVHAPADGMP1380
 1381 PYRRRQGGQR EERGCRPPCR GELAGRHPDP DGRLVAAAEN EAFTPLPPLR LLPPREGAVL1440
 1441 PGAARSIPAL GGLRYASAPT PSAPGPLHDS CRHALPPPLY ITRPSAPAYK TPPKQHRSYS1500
 1501 FVSAARSAAG SGGTPSQAAE AAYLSESGWL VRFPVVANKS HI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle