YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50751630
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYVRRYYTDA AALNPFLAQP LPRSGRRSGH SERGGRPEIG AAVPLRGPTG GREQRAAGLL  60
   61 IGCRGAVPAA SLRVTETAAG SGWAVGSKGG CRPGELLRGP SGRMAAVDDL KFREFDDAAT 120
  121 LLAANPDATT ISIDEPTEAH KKQHSRRQEP GREEDDELLG TDDSDKTELL AGQKKSAPFW 180
  181 TFEYYQTFFD VDTYQVLDRI KGSVFPVPGR NFVRLYVRSN PDLYGPFWIC ATLVFAIAVS 240
  241 GNLSNFFIHL GRPTYHYVPE FRKVSIAATT IYAYAWLVPL ALWGFLMWRN SKVMNIVSYS 300
  301 FLEIVCVYGY SLFVYIPTAI LWIIPQKVVR WVLMIFSLCL SGSVLVMTFW PAVRDDNRRI 360
  361 ALATVGTIVL LHALLSVGCL AYFFDAPEVD FPAPIIPAHN GTTLITKVK

Type	Start	End	Confidence
Cytoplasmic	1	223	0.95
Transmembrane Helix	224	248	0.86
Non-Cytoplasmic	249	265	0.87
Transmembrane Helix	266	287	0.91
Cytoplasmic	288	298	0.81
Transmembrane Helix	299	324	0.81
Non-Cytoplasmic	325	330	0.79
Transmembrane Helix	331	353	0.91
Cytoplasmic	354	360	0.89
Transmembrane Helix	361	384	0.92
Non-Cytoplasmic	385	409	0.92