YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50753571
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTDNYSWHL NTAMLPHGAK AKGSHLGGSG DIGGFLALVG GFLALVGGFR EEDSGATWWP  60
   61 LGFFPVSLGD GDVPGEWGME VALGRGHGDV VPRHDGCPRG STRSSRRDVT HQATCSTDGF 120
  121 LTDSSYPIWE DFNSKATKLH SQLRTTVLAA VAFLDAFQKV ADMATNTRGA TRDIGSALTR 180
  181 MCMRHRSIEA KLRQFTNALM ESLINPLQDR IEDWKKTANQ LDKDHAKEYK RARHEIKKKS 240
  241 SDTLKLQKKA RKELLGKGDL QPQLDNALQD VNDMYLLLEE TEKQAVRKAL IEERGRFCTF 300
  301 ITFLQPVVNG ELTMLGEITH LQGIIDDLVV LTAEPHKLPP ASEQVIKDLK GSDYSWSYQT 360
  361 PPSSPSSSSS RKSSMCRCSS YEHLFPHGHP SPETSHRTRL VHMGTSDIGR EHPRRPASPC 420
  421 QPLGHQQWNL LGLEGTEAAV VTTASMFPAA ELNKVF

Type	Start	End	Confidence
Cytoplasmic	1	26	0.63
Transmembrane Helix	27	48	0.66
Non-Cytoplasmic	49	456	0.92