YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50756407
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDSFAIHFL KVLRELLAFV LFSYTVLVGA LLLAGWTTYF LEALAENTGD YCSYRSSQKQ  60
   61 SSTTYSGKVK MKWTKADGSR ASPPPLTATV NPTAAPRALP TCPPSAHAPI RTTLPAWRHF 120
  121 RRTAHSQDGG AVLLAAGLVL SPENIAGSRS PSPAAADDPC SGVSVLTVSR MPRHGLPALA 180
  181 GTGRRGLPGG SGRWRRAVGA GLGAALCAVP VAEKQNSASL SNDALIKRAV TLVTDSTSTL 240
  241 LSQTTYALIE ALTEYTKAVY TLVSLYKQYT NLLGKMNSDE VDAVWQVVIG ARVDMTTKQQ 300
  301 EYLKLESSWM TALRLSEMAA EAAYQSGADQ ASVTARSHIQ LIKSQVQEVR QLSQKAETKL 360
  361 AEAQTEELLK TQGEESTLPQ GILGSTDAGE DPYLRED

Type	Start	End	Confidence
Cytoplasmic	1	15	0.77
Transmembrane Helix	16	39	0.79
Non-Cytoplasmic	40	397	0.91