YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50757295
Protein type: Transmembrane
Type Confidence: 0.92
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYAATWLAG WNKTQNFKPA VLFLRFYYLL AFAPLWVPLI ERCFPLITLG AVLRVRGVCS  60
   61 LTPGLPALQL WGCVLPGALL LPPRKASGST IHTNDASLSS WLTKPATCAL GLCCSPHHCS 120
  121 MQRAAAPRAS ESTSRKMSTV TSAIQAPQGP VNPPPPEVTN PNKPGRKTNQ LQYMQNVVVK 180
  181 TLWKHQFAWP FYQPVDAIKL NLPDYHKIIK NPMDMGTIKK RLEHNYYWSA SECMQDFNTM 240
  241 FTNCYIYNKP TDDIVLMAQA LEKIFLQKVA QMPQEEVELL PPVPKGKGRK PSVGTQSAGT 300
  301 QQAVAVSSVS PPAPFQSVPP AVSQTPVIAA TPVPTITANV PPVTAPPAAA PPPPAAPIMP 360
  361 VVPPTPPVVK KKGVKRKADT TTPTTSVITA SRSESPTPLS DPKQAKIIAR RESGGRPIKP 420
  421 PKKDLEDGEV PQHAGKKGKL SEHLKYCDSI LKEMLSKKHA AYAWPFYKPV DAEALELHDY 480
  481 HDIIKHPMDL STVKKKMDSR EYQDAQGFAA DIRLMFSNCY KYNPPDHEVV AMARKLQDVF 540
  541 EMRFAKMPDE PAEAPPPPPP TAPVVSKSTE SSHSSEESSS DSDSSDSEEE RATRLAELQE 600
  601 QLKAVHEQLA ALSQAPVNKP KKKKEKKEKE KKKKDKEKEK EKHKVKAEEE KKPKVAQPPK 660
  661 QTQQKKAPAK KANSTTTASR QPKKGGKQAS ATYDSDEEEE GLPMTYDEKR QLSLDINRLP 720
  721 GEKLGRVVHI IQSREPSLRD SNPDEIEIDF ETLKPTTLRE LERYVKSCLQ KKQRKPFSAS 780
  781 GKKQAAKSKE ELAQEKKKEL EKRLQDVSGQ LNNNKKPAKK APWKLPLRCL LSRREIWLCS 840
  841 LWGPFPAQQQ QLLRVGQQQL QRLQLRQQRF RMSYGHLHET QNGHHPHRCS AVSLSLLKYQ 900
  901 PLWLHLCCGS ALKLTLLRSP VVQIAPMLIS HIALVVSQHV ISDASVSADQ SVSRKEEVFS 960
  961 VHTESLQGLV WCSCIALPPE ECKQTARPGA GSRDNVDVSL QSHCCCCTSM GKVPAGHRRC1020
 1021 WAASVAWSPS AWQLSTPWAK RTSPLVADLG CFDAEGQPGD DVLPSSVRVR AACDGGRSSA1080
 1081 TAIPATRGPV GRCQLPHPEQ ASFHCTHSTT PNMGCHRQHK AVGTSSSRSD PSRAPLWPQP1140
 1141 CGWDGASLLR VHVQIWDTIL HDSTELGLPR VPGDVQLVLV PHQDGLIAVL 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle