YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50757350
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.84
Transmembrane Helix	7	25	0.82
Non-Cytoplasmic	26	60	0.81
Transmembrane Helix	61	80	0.90
Cytoplasmic	81	95	0.80
Transmembrane Helix	96	116	0.93
Non-Cytoplasmic	117	121	0.75
Transmembrane Helix	122	141	0.88
Cytoplasmic	142	150	0.76
Transmembrane Helix	151	171	0.89
Non-Cytoplasmic	172	177	0.67
Transmembrane Helix	178	195	0.76
Cytoplasmic	196	210	0.66
Transmembrane Helix	211	233	0.95
Non-Cytoplasmic	234	242	0.63
Transmembrane Helix	243	264	0.93
Cytoplasmic	265	283	0.68
Transmembrane Helix	284	303	0.91
Non-Cytoplasmic	304	342	0.69
Transmembrane Helix	343	364	0.92
Cytoplasmic	365	386	0.88
Transmembrane Helix	387	407	0.89
Non-Cytoplasmic	408	421	0.74
Transmembrane Helix	422	443	0.86
Cytoplasmic	444	457	0.78
Transmembrane Helix	458	478	0.91
Non-Cytoplasmic	479	487	0.68
Transmembrane Helix	488	508	0.80
Cytoplasmic	509	523	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNKPVLVES LIVFSIVLCV HAVVWDRYSW CAVALAIQAF YVQFKWDRLL QQGGAVFQFR  60
   61 TTANSGLLPA SMVIPLLGIA MKERCKAAGI VYFERFGIVV ASTGMLVALF LSVIAVGITK 120
  121 PVPTNTCILS GVAGSIIIYT MKHSLTVSEV IEVLEVLLIF VYLSMILLYL LPRCFTPGEA 180
  181 LLVLGGISFV LNQLIKRSLN VIEGRGEPID FFLLVAVIGV VILGLFFTVL FIFMDSGTWI 240
  241 SSMFFHMMTA VLGLGVIMPW LYRLIRRNPL FWLLQFLFQT QTRVYLLIYW TLLAASACGI 300
  301 VFYQNAKRSS ESKKHQASTI TRKYFHFIVV ATYVPGLIYD RQLLHVAAVL CLAVFIFLEY 360
  361 IRYFRIKPFG QTLRYLLSLF LDERDSGPLI LTHIYLLLGM SLPVWLFPRS CAPKGALSGA 420
  421 GALVPYAGVL AVGVGDTMAS VFGSTMGEIK WPGTKKTFEG TMTAIFAQII AVALILIFDS 480
  481 SVNLNSSYAW ILVSVSLVSL LEAYTTQIDN LLLPLYLQIM FMV