YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50757538
Protein type: Transmembrane
Type Confidence: 0.87
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSDAESQQP LPCRVRPTPR AAGHCETPAG RAGERLAPSG RRRPEAEQRG LGVWSAGISW  60
   61 WFLPAFGFCP NRGSGRPSCQ LAAARSSPTS PAARALLERP ADTSCPAPSG AALRCEPGGP 120
  121 LPDPVTLLRS GDSAESPVLL SSTLKLPGTM FWGLLSLLLF AVASGTPVGD QDEDIQVQEN 180
  181 FEPERVTAAW RSLEFMYGKW YDVAVGTTCK WMKNYKEKFS MGTLVLGPGP SADQISTIST 240
  241 RLRQGDCKRV SGEYQKTDTP GKYTYYNPSK LGLLPACWVL RATVLSGDMN QVQTSDDDTA 300
  301 EWDVSIKSYV LRTNYEEYAV ILMKKTSNFG PTTTLKLYGR SPELREELTE AFQQLALEMG 360
  361 IPADSVFILA NKDACRLNRD PGPCSGMLSR FFYNTSSMAC ETFLYGGCLG NGNNFYSEKE 420
  421 CLQACRTEAA CRLPIAQGPC QKPVIRWAFD AAQGKCIRFS YGGCKGNGNK FYSEKECKEY 480
  481 CGAPPQADNE GPPGALTGSP AMGCSHPPAS TAPRASAGAR GASWETEGAV GVTEGNIGGT 540
  541 WGVTEGPWGQ RSGLKELRCW RGLPVLCRAW PYAPPGAALP LSPWRRRPFS QRRRRRRGSG 600
  601 TMFSALKKLV GLDQAAVRDK NIPAGLQSMN QALQRRFAKG VQYNKHSTFS ALSFTLEAVS 660
  661 HVHASQQNHC CMCLEFRLLC LAQPLLPGCL CTELMALPLL QMSVIGNKKS VKMNALCRMK 720
  721 EILTERLQQL TRAGGHIKQE HMVPLAPSAD LRRRKLSVLR MSNMEESSSW FSSLVQLNSD 780
  781 CMSDGVGSRK RGGVKIVIRG DRNTGKTTLW HRLQGKKFIE EYIPTQEIQV TSIHWNYKKK 840
  841 RGIERSFQGK QFSSSAIQQC CCSVETTDDI VKVEVWDVVD KALPFFVSRC ENAQEIMENL 900
  901 SNLPPEKLHA ESEMALDAEF LDVYKNCNGV VMMFDITKQW FGMCRPMFQS RKSGNYRDMG 960
  961 EHRVLLPGDV RDFIDNLNRP PGSSYFRYAE SSMKNSFGLK YLHKFFNIPF LQLQFRETWQ1020
 1021 LEDWKAVLLL VLGSLRAEEL LGCTCDSTVS FVEPVFSALL SVIGPYESPG REMLELLLLE1080
 1081 GSPEWCSCWC CCLAALWAAA AGQPSSWECR HWLSITRVVI DLFTRETLLR QLETNQLDID1140
 1141 ATLEELSVQQ ETEDQNYELF LEMMEARSRG HASPLTTNGQ SPSSGSQSPI VPPSSTSTGS1200
 1201 SSPGTPQPPQ PPSTSSTVSP EPPSSFSPVP APEAQPPHAP LPAAASPAPP AAAPPPKRSI1260
 1261 ISRLFGTSPA PEPSPPQPDA AAAAPPHPAA PAKVQSVEDF VPDDSLDHSF LEDSAPQKDK1320
 1321 GRPQTKHRVD SESDGETPGG NPMVAGFQDD LDLDDKIPSR AVLATERVPS KNITLSSEEE1380
 1381 EEEEAKDSRV TLIPDESIDT EREKKRSSRN SVKPQSEAVL TKATDPKPPD SLPPHSGSER1440
 1441 SSSSKLGASL PTAAATPAVQ ASKTTSQSKG HALKQKVVKE EKPEESDSDQ EGPIATQMLS1500
 1501 FVMDDPDFES EESDSQRKKM DEFPVREDLS EISDDDTSLA KPPQPVKSTV HSFKLKNDSD1560
 1561 LFGLGLEETG PKESSEEDKH ASKEKKKKKK KSKEEEEKSV KKKSKHKKGK EKEESKEEKD1620
 1621 RKKKKKRSKE KNNEIDELEA FLGGGGASMS KPRGGGDYEE L

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle