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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50758116
Protein type: Transmembrane
Type Confidence: 0.83
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIWPYIYTS ICLYVCTSVP VQWGCRAHPT PSPDLGPPHD LRAAHPPRYS VPLRLPQQEA  60
   61 RWDRTNHGAA VGWPRRARSQ PIGGRRGRLM APPTLGAEWC APPYVPAAPG CGHRQRRTAR 120
  121 EGGGTAQDSF LSMTDVFLIS LITGLFTYWF FFRKKKEEIP DLPKIQTVGP GIGESTPNFS 180
  181 FNCSQYSCIS KEDAGIALLE LLLIVEEDVH NQSTLFWMAS HLILWPCLPT CAGSSPALTL 240
  241 LTERAALGLF VCLFPALTMG CVYSVPGEEA AVSRSSPARD SSFIEKMKKT GRNIVVFYGS 300
  301 QTGTAEEFAN RLSKDAHRYG LRGMAADPEE YDLSDLSRLS EIDKSLAVFC MATYGEGDPT 360
  361 DNAQDFYDWL QEADTDLSGL RFAVFGLGNK TYEHFNAMGK YVDKRLEELG AQRIFELGLG 420
  421 DDDGNLEEDF ITWREQFWPA VCEHFGVEAT GEESSIRQYE LVVHTDVNMN KVYTGEMGRL 480
  481 KSYENQKPPF DAKNPFLAVV TENRKLNEGG ERHLMHLELD ISNSKIRYES GDHVAVYPAN 540
  541 DASLVNQLGE ILGTDLDTVM SLNNLDEESN KKHPFPCPTS YRTALTYYLD ITNPPRTNVL 600
  601 YELAQYATDT GEQEQLRKMA SSSAEGKALY LSWVVEARRN ILAILQDMPS LRPPIDHLCE 660
  661 LLPRLQARYY SIASSSKVHP NSIHICAVTV EYETKTGRLN KGVATNWLKD KVPNENGRNS 720
  721 LVPMYVRKSQ FRLPFKPSTP VIMIGPGTGI APFIGFIQER AWLKEQGKEV GETVLYYGCR 780
  781 REREDYLYRQ ELARFKQEGV LTQLNVAFSR DQAEKVYVQH LLKKNKEHIW KLVNDGNAHI 840
  841 YVCGDARNMA RDVQNTFYEI VSEYGNMNQS QAVDYVKKLM TKGRYSLDVW S

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle