YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RER1_CHICK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEGDSIGES VHGKPSVVYR FFTRLGQIYQ SWLDKSTPYT AVRWIVTLGL SFIYMIRVYL  60
   61 LQGWYIVTYA LGIYHLNLFI AFLSPKVDPS LMEDSDDGPS LPTRQNEEFR PFIRRLPEFK 120
  121 FWHSATKGIL VAMACTFFEA FNVPVFWPIL VMYFIMLFCI TMKRQIKHMI KYRYIPFTHG 180
  181 KRKYKGKEDV GKTFAS

Type	Start	End	Confidence
Cytoplasmic	1	39	0.89
Transmembrane Helix	40	58	0.86
Non-Cytoplasmic	59	64	0.59
Transmembrane Helix	65	83	0.86
Cytoplasmic	84	118	0.82
Transmembrane Helix	119	138	0.80
Non-Cytoplasmic	139	144	0.66
Transmembrane Helix	145	163	0.92
Cytoplasmic	164	196	0.96