YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50759504
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELRQRLCG EREPEPEEKL QESESENKLD GETASDSESK SEFGGSPPVP TSDDTPEVLN  60
   61 RALSNLSSRW KNWWVRGILT LAMITFFFII IYLGPMVLMT IVMCVQIKCF HEIITIGYNV 120
  121 YHSYDLPWFR TLSWYFLLCV NYFFYGETVT DYFFTLVQRE EPLRILSKYH RFISFALYLT 180
  181 GFCMFVLSLV KKHYRLQFYM FGWTHVTLLI VVTQSHLIIH NLFEGMIWFI VPISCVICND 240
  241 IMAYMFGFFF GRTPLIKLSP KKTWEGFIGG FFATVLFGLL LSYVMSGYRC FTCPVEFNND 300
  301 TNSFTVDCEP SELFQLQEYN IPLVLQSVVG WKTVRMYPFQ IHSIALSTFA SLIGPFGGFF 360
  361 ASGFKRAFKI KDFANTIPGH GGIMDRFDCQ YLMATFVNVY IASFIRGPNP SKLIQQFLTL 420
  421 RPDQQLHIFN TLKAHLLDKG VLVGSEDA

Type	Start	End	Confidence
Cytoplasmic	1	72	0.93
Transmembrane Helix	73	93	0.92
Non-Cytoplasmic	94	98	0.64
Transmembrane Helix	99	121	0.54
Cytoplasmic	122	127	0.54
Transmembrane Helix	128	146	0.69
Non-Cytoplasmic	147	171	0.73
Transmembrane Helix	172	190	0.94
Cytoplasmic	191	198	0.75
Transmembrane Helix	199	219	0.84
Non-Cytoplasmic	220	226	0.80
Transmembrane Helix	227	250	0.92
Cytoplasmic	251	265	0.84
Transmembrane Helix	266	285	0.93
Non-Cytoplasmic	286	340	0.92
Transmembrane Helix	341	361	0.93
Cytoplasmic	362	448	0.81