YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22655008, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADIDIGTAA TTGGNEGRGG TRERLINREN KFTRSVSHAQ DELHSFRKYL RWMCVDQSSP  60
   61 WTAVLSWSMF VVFTLVVPAT SHFMLACSDC DSHHSRPYDS VVQLSLSSFA ALSFLCLSRF 120
  121 VSKYGLRRFL FFDKLWDESE TVRLGYTNQL NRSLKILSYF VSPCFLAMSS YKIWWYASGA 180
  181 SQIPFLGNVI LSDTVACLME LCSWLYRTTV IFLVCVLFRL ICHLQILRLQ DFAQVFQMDS 240
  241 DVGSILSEHL RIRRHLRIIS HRYRTFILLS LILVTGSQFY SLLITTKAYA ELNIYRAGEL 300
  301 ALCSMTLVTA LLILLRSASK ITHKAQAVTC LAAKWHVCAT IESFETVDGE TPRLVDRASG 360
  361 HGYYPTDDDN GESDSEDYGD EEDDFDNNNL IPAYAYSTIS FQKRQALVNY FENNRSGITV 420
  421 FGFTLDRSTL HTIFGIEMSL VLWLLGKTIG IS

Type	Start	End	Confidence
Cytoplasmic	1	60	0.97
Transmembrane Helix	61	82	0.87
Non-Cytoplasmic	83	100	0.89
Transmembrane Helix	101	121	0.93
Cytoplasmic	122	155	0.95
Transmembrane Helix	156	175	0.83
Non-Cytoplasmic	176	203	0.76
Transmembrane Helix	204	222	0.87
Cytoplasmic	223	262	0.93
Transmembrane Helix	263	284	0.91
Non-Cytoplasmic	285	293	0.88
Transmembrane Helix	294	315	0.91
Cytoplasmic	316	429	0.96
Transmembrane Helix	430	451	0.52
Non-Cytoplasmic	452	452	0.60