YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21553847
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIACPRVSPN GVPYLPPKPR TRHLVVRAAS NSDAAHGQPS SDGGKNPLTV VLDVPRNIWR  60
   61 QTLKPLSDFG FGKRSIWEGG VGLFIVSGAT LLALSWAWLR GFQMRSKFRK YQTVFELSHA 120
  121 SGICTGTPVR IRGVTVGTII RVNPSLKNIE AVAEIEDDKI IIPRNSLVEV NQSGLLMETM 180
  181 IDIMPRNPIP EPSVGPLHPE CGKEGLIVCD RQTIKGVQGV SLDELVGIFT RIGREVEAIG 240
  241 VANTYSLAER AASVIEEARP LLKKIQAMAE DAQPLLSEFR DSGLLKEVEC LTRSLTQASD 300
  301 DLRKVNSSIM TPENTELIQK SIYTLVYTLK NVESISSDIL GFTGDEATRK NLKLLIKSLS 360
  361 RLL

Type	Start	End	Confidence
Cytoplasmic	1	78	0.78
Transmembrane Helix	79	99	0.94
Non-Cytoplasmic	100	363	0.80