YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21593606
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKTKTTSLL CFLLTAVILM NPSSSSPTDN YIYAVCSPAK FSPSSGYETN LNSLLSSFVT  60
   61 STAQTRYANF TVPTGKSEPT VTVYGIYQCR GDLDPTACST CVSSAVAQVG ALCSNSYSGF 120
  121 LQMENCLIRY DNKSFLGVQD KTLILNKCGQ PMEFNDQDAL TKASDVIGSL GTGDGSYRTG 180
  181 GNGNVQGVAQ CSGDLSTSQC QDCLSDAIGR LKSDCGMAQG GYVYLSKCYA RFSVGGSHAR 240
  241 QTPGPNFGHE GEKGNKDDNG VGKTLAIIIG MITLIILLVV FLAFVGKCCR KFQDEKWCK

Type	Start	End	Confidence
Signal Peptide	1	25	0.99
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	264	0.99
Transmembrane Helix	265	286	0.92
Cytoplasmic	287	299	0.91