YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYPFQLGLQ DATSPIMEEL TNFHDHTLMI VFLISSLVLY IISLMLTTKL THTSTMDAQE  60
   61 VETIWTILPA VILILIALPS LRILYMMDEI NNPVLTVKTM GHQWYWSYEY TDYEDLCFDS 120
  121 YMIPTNDLKP GELRLLEVDN RVVLPMELPI RMLISSEDVL HSWAVPSLGL KTDAIPGRLN 180
  181 QATVTSNRPG LFYGQCSEIC GSNHSFMPIV LEMVPLKYFE NWSASMI

Type	Start	End	Confidence
Cytoplasmic	1	25	0.70
Transmembrane Helix	26	47	0.89
Non-Cytoplasmic	48	62	0.66
Transmembrane Helix	63	85	0.89
Cytoplasmic	86	227	0.73