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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46096428, gi|...
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAPARPPR YGIDTAMDQP SGYTADANST TSHGSSSRFI PAAGTRSTSA PAPAPIALAD  60
   61 VLSRSNGDHV SALDQVLAER NQFCLDNAKL SSENVRIWNL MGRIRKENDN LKARCAELER 120
  121 ASGIQPGSTK GSPLTSAANV TPSSPASDRR RLPVANEGGR SSPLSPPRHA RQNSRSDLDQ 180
  181 RLGPATSTQS VHPSIGSAAG IYEQNPTHPS TNGSSHVSDS PITSIDQGPS RNPQPVDLTA 240
  241 DRGVENGSQA SIMQQRAAAQ AQAQSLSLVR PSQGTDDPTD SAASQEDFEA IDRSSASGTD 300
  301 DGIHPTGTTR HTSAQDTLRT TQSQPLPSGV AASPHRSRRD RSAEQERSLL ASGPNRNRAE 360
  361 VTPMMIPSSS ARSLVPKVVS DDRLSRGLGS RKSKDDAKKR VLAPRLDSSL LRVASVKIQG 420
  421 TNYRALDRAK DSISFLITVD ILHPPASWGL NSLSSGEPAP PTSWTIEKSY SDIVGLDAKL 480
  481 RSKVGKKAAQ RLAPLPDKAL FKDHAPAKVD QRKALLEIYL QSLMVLELPD KDEVCTFLCT 540
  541 DVVPNRVRNP TSNSKEGFLT KKGQNLGRWV TRFYVLRNSC LSYFETRGGA QIGSINIREA 600
  601 QIGRQQKSAS TSEQDENAYR HAFLILEKRD ASHEEPAHIA RHVLCAESDE ERDDWVDVLV 660
  661 RAIAELEDDE ADETPTSPTS SMNKMSLSQT PITPSRDGGY SGRLPDGTFS PSAESRHFAN 720
  721 DGDRGAPPGQ DSSRNPSLRL NSLDSTAIGK QATPAAATSL TQSTSYRSFN EPRSPPGNRN 780
  781 MDLQDAPGSP GPRSESIGRA KASISGPING APIPAGYKFG AKDDVSSDNK KDDKKRFWQG 840
  841 FRAFGGHDKQ NREPRPVFGV PLAESIAISS IHEGLALPSV VYRCIEYLEK RNAFMEEGIY 900
  901 RLSGSSAVIK TLKDRFNMEG DVDLLAENEY YDPHAIAGLL KTFLRELPTS VLTRELHMDF 960
  961 MRINELQDRV ERVNELGHLV SQLPLANYSL LRTLCSHLIK IIEHSDVNKM TMRNVGIVFS1020
 1021 PTLAIGAGIF ALFLTEFDAV FETDANGEPA PKRIEEEVAP VDLADDALEE NAKRNKRNSS1080
 1081 LYNQSQADKL LGLEGRSLAH RTVDDNMEGI PEPIHESWVE NEAGTDGQIN AGSFDQHLET1140
 1141 APRMLLNYTT IAVQAAVNPV GDDVKDQFYP PSPPLVPETL YSTSPHAPID KREARRRLKA1200
 1201 EHRAGRYADP TWVTLLVLAL AILYWLLPIP GIFHFLYARK TQVCDCASNP STATASVAFP1260
 1261 RTMPWQKQFT LSSRSKGCHL ITNEVMPHLE EGLKGVKVGI LTLFIQHTSA ALTLNENFDR1320
 1321 DVRTDMDMAL DRVVPESLPW KHTDEGPDDS VSHTKTSLIG PSVTIPITDG RLNLGTWQGI1380
 1381 TLCEFRKLSH RRKIVATILP 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle