YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71005300, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIFKRNPRA TDAGDAVQNG SSNDADSDAS SAKGLRKFAQ RKPANTAFKQ QRLKAWQPIL  60
   61 TPRTVLPAFF LVAIIFAPIG AVLYYFAEKV NEFSLDYTQC STAPAVPTQA QIPSSKYDYQ 120
  121 LHDKNTSNFQ PPTWSWDAST RTCNLYFSVP ARLDSSVFLY YKLTNYYQNH RRYVKSLDSD 180
  181 QLKGNAVAYG TISGGTCKPV DVDPSTQKII YPCGLIANSV FNDTFGDPVL LNVAGSNSPN 240
  241 QTYVMSEKNI IWPGEKDKYS KTKYNADQII PPPYWQGATG KYGYGSGYTD DNIFDPSQDE 300
  301 HFMVWMRIAG LPTFRKLYKR NDTAAMEPGR YLLQVVDNYP VAMFDGTKSV VFSTSSWVGG 360
  361 RNPFLGLSFI AVAAFAVLLG LVFTARHLIK PRKLGDMSYL SWNQPENKSS

Type	Start	End	Confidence
Cytoplasmic	1	63	0.95
Transmembrane Helix	64	87	0.89
Non-Cytoplasmic	88	363	0.98
Transmembrane Helix	364	385	0.93
Cytoplasmic	386	410	0.95