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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46097381, gi|...
Protein type: Transmembrane
Type Confidence: 0.79
Topology Confidence: 0.41
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSKRTKTV APYGFWESPI STDLLLQKAT GLSEVLVPAN SETGQEVAWV ELRMSESGRY  60
   61 ALMHSSDLSS EKATDITSGK YSSRSGVHEY GGGAAASLAD GSFIFSDYNP KSFDVLRAKR 120
  121 DEEPQVVSPE NAAIRYADFG PHPAEADLCL AVQEDHTDDT PSTVVNSIVL LDLSSKSAKV 180
  181 HTLLQGRKAD EETDANGPQK RDFYTFARFS PNGKYVCWVS WNHPSMPWWD TQLWVAKLDR 240
  241 SDPEAPKLVS PTQIKVPGSE ARKQQVLQQP VWAIPANSKD DAAKLFFACD ATGYLNLYFA 300
  301 TVACESNDHG ISVSSPELIL PEPVKHDFVG PAWTCNNSDY IALSPDLLIV SYSEGAKENL 360
  361 GLINLRRPRL IPLKSPFVSV SQLRRLTSTS FALLATRPDE PNSLVRIDLR GLAANNYVVQ 420
  421 PSNITVIKRS STLISDGVIE RAYLSEAREI DFPTTLANGK PSVAHAIIFE PKNKEFTGPK 480
  481 GKAPPCVFMI HGGPSASAGM GFNLQTQFWT SRGFMVCFVN YGGSTGYGRE YLERLTGEWG 540
  541 VTDVTDCVAA AKFLGSQASL DPRPFGSLTA EEQSKVRKQL EADEREGVVV EEELCGGGIK 600
  601 VTLKNTTPAW SWMDLIVAGV SAGVGAISVR FASNVMHNYS HCIPALMRPT TAFGQNAVKL 660
  661 GLATLSLLPF VASKLGRVVS ESVSILPGIG VQLGITRGLT LSANRKWVLE RTSQRLIPQD 720
  721 RVVDIYVGEG YRHFSVVDYL AVVTSVSGGA STEPLFSRLL PRLSTVQRIY ATLHAHLGVN 780
  781 ASKSRAFSGA IRAKPRSSLA DASALLISGG SAGGYTVLAS LCFYPHIFTG GVSRYGVSSL 840
  841 SLLAAESHKF ESRYPFQLIG GTPTLRPDLY HDRSPIFYAT NIKAPILLLQ GSDDKVVPKS 900
  901 QADQFVQQLK NGGGKEGKDW RYKVYEGEGH GFRRAENVKD SLDEELRWWQ NRCLRP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle