YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71014085, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKARRRNLR PNTSSVFSIA SKQQRHAQSS KRSAELEMVP DATDNRLHAD VRDQLELESF  60
   61 IDMTSQSAHF LPTRSQPRPA DLKSGCCPTV NDTGYDDTMT AWLSQEQQSS APLPARNVVN 120
  121 FLRNKSGIKT RVGALNGKRV DYFKGSAAVK ALLSPAYAKL KDVPKVSSKE EAEEALHNII 180
  181 PFAFFLRVER GTSTGGKDSP KIVEINPQQM FRSDLYYVWL YEGSQLGLKL AGLGMVAVML 240
  241 AGVMFPLWPP TMRLGVWYLS IGALGLIGLF FAIAIVRLIF WLITLVVAKP GIWIFPNLFE 300
  301 DVGFVDSFIP LWAWDVAPPP KKKSSKASAV AAATGGSEKK KPSSSGAGAR QQALSGLGGA 360
  361 APTAPPSPPK PPQQAAHSTP APQQNGGVQN HATGSGGPGA SESLDDIN

Type	Start	End	Confidence
Cytoplasmic	1	225	0.52
Transmembrane Helix	226	248	0.88
Non-Cytoplasmic	249	255	0.44
Transmembrane Helix	256	281	0.85
Cytoplasmic	282	408	0.68