YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46098758, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSIFVPIG YVATLVVSML VFSRIYRRRS ALKLAKSYQP WFGEGHEARD IYQTLVAADP  60
   61 PAPEEVLKAA LLNRAMTDVR RIMRMRDDKQ ALATLLQKGS IGDETMARFT LAEKELEAEI 120
  121 LDVVSEANTF REGWGQLIFP TASEMVAHLK HKEIYYDIQR QRAAEVKTLQ DQGLPVPKPT 180
  181 VELPPLVTPP GTKIEIQRGS QGGPDAPGAP GAPDGPGISL PMTGSGADAR VTLPNGQQIH 240
  241 PAQLAALMQG PLPPNLPPQQ VAMLMQARAQ LQALQDQAQA QAQAQSQQQQ QQQQPSKGTT 300
  301 EATQAAVAVP ASARDGADSA PAAVSKTATV EDDDEA

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.72
Transmembrane Helix	7	26	0.84
Cytoplasmic	27	336	0.80