YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46100047, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKKLAIREE LNGTHSSDRI GLYHLLVNII PPIPYAAAAF QYSFYSIRAS SMSAASLTRS  60
   61 LARLNLAHGS QVARITSRQP VRLVAPIASS FFRITACAYT TPTSSAAIRL GNLQPGQPTK 120
  121 NSRDVFAHIS ALVLYADMIA QRKRLGRGPS SGRGGTSTRG HKGQKARAGN GKPVPGFEGG 180
  181 QSPLTRRFPK RGFNNVHGQT FVAVNLDKIQ HWIDRGLLDP SRPITAKELY ETRCIHSLKD 240
  241 GVKILGEGAN HLEAPVNLIV SRASQSAIQA IEAAGGSVEC RYYTPLSLRA LVKPHKFAGK 300
  301 ILPRPADPIN KKDLVWYSSP RNRGYLAKRA ALTRALTAED TVAKEEAVSE TVA

Type	Start	End	Confidence
Cytoplasmic	1	19	0.83
Transmembrane Helix	20	40	0.80
Non-Cytoplasmic	41	353	0.89